miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 2125 1.13 0.000251
Target:  5'- cGGCGCCGCAGUGAAAGCAGGCCUCGCc -3'
miRNA:   3'- -CCGCGGCGUCACUUUCGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 25738 0.86 0.024938
Target:  5'- gGGCGUCGCGGUGguGGCAGGCgaaccggcucgaCUCGCg -3'
miRNA:   3'- -CCGCGGCGUCACuuUCGUCCG------------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 14196 0.79 0.081944
Target:  5'- aGGaCGCCGCcgaGGUGuccgccGAGCAGGCCcUCGCc -3'
miRNA:   3'- -CC-GCGGCG---UCACu-----UUCGUCCGG-AGCG- -5'
26326 3' -57.8 NC_005345.2 + 23355 0.78 0.08924
Target:  5'- cGUGCUGCGcUGGGAGCGGGCCgaggCGCc -3'
miRNA:   3'- cCGCGGCGUcACUUUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 31460 0.78 0.094177
Target:  5'- aGGCGCCGgGGUGcggguguGAGGCGGGCgagCGCg -3'
miRNA:   3'- -CCGCGGCgUCAC-------UUUCGUCCGga-GCG- -5'
26326 3' -57.8 NC_005345.2 + 16366 0.77 0.102789
Target:  5'- cGGCGCCGCGGUGAucGCGacgaucGGgUUCGUc -3'
miRNA:   3'- -CCGCGGCGUCACUuuCGU------CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 27716 0.76 0.132168
Target:  5'- uGGUGuCCGCAGacgcGGCcGGCCUCGCg -3'
miRNA:   3'- -CCGC-GGCGUCacuuUCGuCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 34504 0.75 0.151671
Target:  5'- cGGUGCCgaggacGCGGUcGAGGCGggccgcGGCCUCGCg -3'
miRNA:   3'- -CCGCGG------CGUCAcUUUCGU------CCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 17269 0.75 0.155874
Target:  5'- aGGCGCCGCGGUccuGGucugcgcGCGGGUCUUGUc -3'
miRNA:   3'- -CCGCGGCGUCA---CUuu-----CGUCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 22328 0.75 0.160181
Target:  5'- gGGUGCCggcaGCAGUGAugcggcGAGCAGcGCCUgcgaCGCg -3'
miRNA:   3'- -CCGCGG----CGUCACU------UUCGUC-CGGA----GCG- -5'
26326 3' -57.8 NC_005345.2 + 14898 0.74 0.188341
Target:  5'- aGGCGgaGCAGcgGGcgAAGCGGGCCgcggCGCg -3'
miRNA:   3'- -CCGCggCGUCa-CU--UUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 23661 0.73 0.193439
Target:  5'- cGGCGCCGacCAG-GGucgcggccggucGGGCGGGCCgagCGCa -3'
miRNA:   3'- -CCGCGGC--GUCaCU------------UUCGUCCGGa--GCG- -5'
26326 3' -57.8 NC_005345.2 + 36126 0.73 0.197079
Target:  5'- cGGuCGCCGCAGUG--GGCAcaccgccaccgugcGGCCggcagCGCg -3'
miRNA:   3'- -CC-GCGGCGUCACuuUCGU--------------CCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 28249 0.73 0.198657
Target:  5'- gGGCGCUgucaaucgggGCAGUGAGugcgcuuuGCGGG-CUCGCg -3'
miRNA:   3'- -CCGCGG----------CGUCACUUu-------CGUCCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 42925 0.73 0.215051
Target:  5'- gGGCGUCGUGGUGcagguaucgGGAGguGGCCagggCGCc -3'
miRNA:   3'- -CCGCGGCGUCAC---------UUUCguCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 32241 0.73 0.220768
Target:  5'- --aGCCGCAGcGgcAGCAGuGCCUCGa -3'
miRNA:   3'- ccgCGGCGUCaCuuUCGUC-CGGAGCg -5'
26326 3' -57.8 NC_005345.2 + 20428 0.72 0.232591
Target:  5'- gGGCGCCGUAccugcccccGUGGAAG-AGGUC-CGCg -3'
miRNA:   3'- -CCGCGGCGU---------CACUUUCgUCCGGaGCG- -5'
26326 3' -57.8 NC_005345.2 + 19116 0.72 0.2387
Target:  5'- gGGCGCucacCGCauGGUGGcuGCGGGCCgcauggCGCg -3'
miRNA:   3'- -CCGCG----GCG--UCACUuuCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 11691 0.72 0.244312
Target:  5'- cGCGCUGCAGgcGGAucgacggccgaccAGCGGGCCgccgcCGCg -3'
miRNA:   3'- cCGCGGCGUCa-CUU-------------UCGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 27563 0.72 0.25132
Target:  5'- gGGUGCCGUucgGggGGCcgucGGGCCgucUCGCg -3'
miRNA:   3'- -CCGCGGCGucaCuuUCG----UCCGG---AGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.