Results 21 - 40 of 126 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26326 | 3' | -57.8 | NC_005345.2 | + | 8507 | 0.68 | 0.399099 |
Target: 5'- cGGCGUCcacugGCAGUGGAcgGGCc-GCCUCGa -3' miRNA: 3'- -CCGCGG-----CGUCACUU--UCGucCGGAGCg -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 8587 | 0.7 | 0.299835 |
Target: 5'- gGGCGUCaCAGUGA--GCAGGUCggGCa -3' miRNA: 3'- -CCGCGGcGUCACUuuCGUCCGGagCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 8930 | 0.66 | 0.548741 |
Target: 5'- cGGCgGCCGCccccGUG--GGCGGGCUgcgggUGCu -3' miRNA: 3'- -CCG-CGGCGu---CACuuUCGUCCGGa----GCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 9044 | 0.66 | 0.538095 |
Target: 5'- cGGCGaCCGCcGgcucguGCAGGUC-CGCg -3' miRNA: 3'- -CCGC-GGCGuCacuuu-CGUCCGGaGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 9594 | 0.71 | 0.257834 |
Target: 5'- gGGCGUgCGaGGUGcAGAGCgAGuGCCUCGCg -3' miRNA: 3'- -CCGCG-GCgUCAC-UUUCG-UC-CGGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 9708 | 0.69 | 0.346936 |
Target: 5'- gGGcCGCCGC-GUGAGccgcgccgcGCGGGCCgcgacCGCg -3' miRNA: 3'- -CC-GCGGCGuCACUUu--------CGUCCGGa----GCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 9964 | 0.7 | 0.330666 |
Target: 5'- cGCG-CGCGGUGAGcucguGUAGGCgUCGUc -3' miRNA: 3'- cCGCgGCGUCACUUu----CGUCCGgAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 9979 | 0.68 | 0.399099 |
Target: 5'- uGGgGuCCGCcucgaccacGUGAAAGCgaAGaGCCUCGCc -3' miRNA: 3'- -CCgC-GGCGu--------CACUUUCG--UC-CGGAGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 10296 | 0.7 | 0.320396 |
Target: 5'- cGGCGCgGgCuGUGGGAGC-GGCCcggcacgagcguguUCGCg -3' miRNA: 3'- -CCGCGgC-GuCACUUUCGuCCGG--------------AGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 10843 | 0.67 | 0.446223 |
Target: 5'- cGGCGCCgagcuGCGGUG--GGCGGacuGCCgcaCGCg -3' miRNA: 3'- -CCGCGG-----CGUCACuuUCGUC---CGGa--GCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 11337 | 0.68 | 0.39819 |
Target: 5'- aGCGCCGCgagcAGUGAGcggcaccgccaacGGCAGcaGCCccggUCGCg -3' miRNA: 3'- cCGCGGCG----UCACUU-------------UCGUC--CGG----AGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 11437 | 0.69 | 0.355283 |
Target: 5'- cGCGCCGCAGcgcGAucccGCAGGaCUgGCg -3' miRNA: 3'- cCGCGGCGUCa--CUuu--CGUCCgGAgCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 11589 | 0.69 | 0.355283 |
Target: 5'- gGGCGCCucGCGGUGGcgugGGGC-GGCCgcugGCg -3' miRNA: 3'- -CCGCGG--CGUCACU----UUCGuCCGGag--CG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 11691 | 0.72 | 0.244312 |
Target: 5'- cGCGCUGCAGgcGGAucgacggccgaccAGCGGGCCgccgcCGCg -3' miRNA: 3'- cCGCGGCGUCa-CUU-------------UCGUCCGGa----GCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 11846 | 0.66 | 0.548741 |
Target: 5'- -cCGCUGCuGUGAGAGCAG-CC-CGg -3' miRNA: 3'- ccGCGGCGuCACUUUCGUCcGGaGCg -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 12875 | 0.67 | 0.475942 |
Target: 5'- uGGCucGCCGCcgGGUGGccGCucGCCUCGa -3' miRNA: 3'- -CCG--CGGCG--UCACUuuCGucCGGAGCg -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 14196 | 0.79 | 0.081944 |
Target: 5'- aGGaCGCCGCcgaGGUGuccgccGAGCAGGCCcUCGCc -3' miRNA: 3'- -CC-GCGGCG---UCACu-----UUCGUCCGG-AGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 14313 | 0.68 | 0.408268 |
Target: 5'- aGCGCCGCgaucccGGUGAugauCAGGCCgaugggguUCGCc -3' miRNA: 3'- cCGCGGCG------UCACUuuc-GUCCGG--------AGCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 14820 | 0.66 | 0.517024 |
Target: 5'- gGGCGCgGguGUGGucgacgcccGAGCAGcuuGCCggGCu -3' miRNA: 3'- -CCGCGgCguCACU---------UUCGUC---CGGagCG- -5' |
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26326 | 3' | -57.8 | NC_005345.2 | + | 14898 | 0.74 | 0.188341 |
Target: 5'- aGGCGgaGCAGcgGGcgAAGCGGGCCgcggCGCg -3' miRNA: 3'- -CCGCggCGUCa-CU--UUCGUCCGGa---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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