miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26326 3' -57.8 NC_005345.2 + 16399 0.7 0.33873
Target:  5'- cGGCucguacaCCGCuGUGAgcAAGCGGGCCcaCGCc -3'
miRNA:   3'- -CCGc------GGCGuCACU--UUCGUCCGGa-GCG- -5'
26326 3' -57.8 NC_005345.2 + 37576 0.7 0.322745
Target:  5'- gGGCGCagGCGGgcUGcAGGCGGGCgaccggCUCGCg -3'
miRNA:   3'- -CCGCGg-CGUC--ACuUUCGUCCG------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 9594 0.71 0.257834
Target:  5'- gGGCGUgCGaGGUGcAGAGCgAGuGCCUCGCg -3'
miRNA:   3'- -CCGCG-GCgUCAC-UUUCG-UC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 16366 0.77 0.102789
Target:  5'- cGGCGCCGCGGUGAucGCGacgaucGGgUUCGUc -3'
miRNA:   3'- -CCGCGGCGUCACUuuCGU------CCgGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 1675 0.68 0.426996
Target:  5'- cGGCGUCGUAcGgccgGAaguuGAGCGGGUCgagaggCGCg -3'
miRNA:   3'- -CCGCGGCGU-Ca---CU----UUCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 11337 0.68 0.39819
Target:  5'- aGCGCCGCgagcAGUGAGcggcaccgccaacGGCAGcaGCCccggUCGCg -3'
miRNA:   3'- cCGCGGCG----UCACUU-------------UCGUC--CGG----AGCG- -5'
26326 3' -57.8 NC_005345.2 + 48562 0.7 0.314966
Target:  5'- gGGCGUCGCGGau---GCGGGCgccgaugagCUCGCg -3'
miRNA:   3'- -CCGCGGCGUCacuuuCGUCCG---------GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 23355 0.78 0.08924
Target:  5'- cGUGCUGCGcUGGGAGCGGGCCgaggCGCc -3'
miRNA:   3'- cCGCGGCGUcACUUUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 34417 0.69 0.390063
Target:  5'- cGGCGCCGCGGaccGGAu--GGGCgaCGCg -3'
miRNA:   3'- -CCGCGGCGUCa--CUUucgUCCGgaGCG- -5'
26326 3' -57.8 NC_005345.2 + 14196 0.79 0.081944
Target:  5'- aGGaCGCCGCcgaGGUGuccgccGAGCAGGCCcUCGCc -3'
miRNA:   3'- -CC-GCGGCG---UCACu-----UUCGUCCGG-AGCG- -5'
26326 3' -57.8 NC_005345.2 + 10296 0.7 0.320396
Target:  5'- cGGCGCgGgCuGUGGGAGC-GGCCcggcacgagcguguUCGCg -3'
miRNA:   3'- -CCGCGgC-GuCACUUUCGuCCGG--------------AGCG- -5'
26326 3' -57.8 NC_005345.2 + 9708 0.69 0.346936
Target:  5'- gGGcCGCCGC-GUGAGccgcgccgcGCGGGCCgcgacCGCg -3'
miRNA:   3'- -CC-GCGGCGuCACUUu--------CGUCCGGa----GCG- -5'
26326 3' -57.8 NC_005345.2 + 26797 0.71 0.292483
Target:  5'- cGGCGCCGC-GUc---GCAGGCgcugCUCGCc -3'
miRNA:   3'- -CCGCGGCGuCAcuuuCGUCCG----GAGCG- -5'
26326 3' -57.8 NC_005345.2 + 28970 0.71 0.257834
Target:  5'- aGGCGCUGCgcgaccugcaGGUGAAccGCuuccGCCUCGCg -3'
miRNA:   3'- -CCGCGGCG----------UCACUUu-CGuc--CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 19116 0.72 0.2387
Target:  5'- gGGCGCucacCGCauGGUGGcuGCGGGCCgcauggCGCg -3'
miRNA:   3'- -CCGCG----GCG--UCACUuuCGUCCGGa-----GCG- -5'
26326 3' -57.8 NC_005345.2 + 14898 0.74 0.188341
Target:  5'- aGGCGgaGCAGcgGGcgAAGCGGGCCgcggCGCg -3'
miRNA:   3'- -CCGCggCGUCa-CU--UUCGUCCGGa---GCG- -5'
26326 3' -57.8 NC_005345.2 + 32912 0.67 0.446223
Target:  5'- uGCGguaCGCAGccGggGGaaucgAGGCCUCGCc -3'
miRNA:   3'- cCGCg--GCGUCa-CuuUCg----UCCGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 4389 0.68 0.426996
Target:  5'- cGGCGCCGCA-UGAgcGCgaucgacaAGGCC-CGg -3'
miRNA:   3'- -CCGCGGCGUcACUuuCG--------UCCGGaGCg -5'
26326 3' -57.8 NC_005345.2 + 9979 0.68 0.399099
Target:  5'- uGGgGuCCGCcucgaccacGUGAAAGCgaAGaGCCUCGCc -3'
miRNA:   3'- -CCgC-GGCGu--------CACUUUCG--UC-CGGAGCG- -5'
26326 3' -57.8 NC_005345.2 + 47153 0.68 0.399099
Target:  5'- aGGgGgCGCuGUGAgcGCc-GCCUCGCg -3'
miRNA:   3'- -CCgCgGCGuCACUuuCGucCGGAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.