Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26326 | 5' | -55.2 | NC_005345.2 | + | 36836 | 0.66 | 0.705938 |
Target: 5'- cGGCGGUGCagGCCggacCCUgGCGGCa -3' miRNA: 3'- cCCGCUAUGagUGGaca-GGA-CGCUGc -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 12886 | 0.69 | 0.531485 |
Target: 5'- cGGGUGGccGCUCGCCUcgaucgCC-GCGACGg -3' miRNA: 3'- -CCCGCUa-UGAGUGGAca----GGaCGCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 28794 | 0.69 | 0.531485 |
Target: 5'- gGGGCGAUGCUCACgCacggcaagGUCCgcaccGCG-CGc -3' miRNA: 3'- -CCCGCUAUGAGUG-Ga-------CAGGa----CGCuGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 39383 | 0.68 | 0.607381 |
Target: 5'- -cGCGAUGC-CGCCggUGUCCUGCaGGgGa -3' miRNA: 3'- ccCGCUAUGaGUGG--ACAGGACG-CUgC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 15385 | 0.67 | 0.618378 |
Target: 5'- cGGgGGUACUUgGCCcgGgugcugCCUGCGACGg -3' miRNA: 3'- cCCgCUAUGAG-UGGa-Ca-----GGACGCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 6834 | 0.67 | 0.618378 |
Target: 5'- cGGGCGGga-UCgACaugGUCCUcGCGGCGa -3' miRNA: 3'- -CCCGCUaugAG-UGga-CAGGA-CGCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 8945 | 0.67 | 0.630487 |
Target: 5'- uGGGCGGgcugcgggugcucggGCUCgACCUGUCgCUccGuCGACGg -3' miRNA: 3'- -CCCGCUa--------------UGAG-UGGACAG-GA--C-GCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 10803 | 0.67 | 0.6514 |
Target: 5'- aGGCGGaccgGCUCGaUUGgugCCUGCGGCa -3' miRNA: 3'- cCCGCUa---UGAGUgGACa--GGACGCUGc -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 9229 | 0.67 | 0.673343 |
Target: 5'- cGGCGAcGCUCAagUCguacgCCUGCGACc -3' miRNA: 3'- cCCGCUaUGAGU--GGaca--GGACGCUGc -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 20605 | 0.71 | 0.439617 |
Target: 5'- cGGCGGgcGCUCGCaaGUCUcgGCGACGg -3' miRNA: 3'- cCCGCUa-UGAGUGgaCAGGa-CGCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 16558 | 0.72 | 0.383644 |
Target: 5'- cGGGUGGcUGCUCACC-GUC--GCGACGa -3' miRNA: 3'- -CCCGCU-AUGAGUGGaCAGgaCGCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 10673 | 0.74 | 0.291818 |
Target: 5'- gGGGCGcgGCgcgggaagugCccgcgcugugcccgGCCUGUCCUGCGGCa -3' miRNA: 3'- -CCCGCuaUGa---------G--------------UGGACAGGACGCUGc -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 16745 | 0.66 | 0.712389 |
Target: 5'- cGGUGGcUGCugUCGCCguuccgcacguucGUCCUGUGGCGg -3' miRNA: 3'- cCCGCU-AUG--AGUGGa------------CAGGACGCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 4899 | 0.66 | 0.727325 |
Target: 5'- -aGuCGAUGCUCGCCgagcUgCUGCGGCa -3' miRNA: 3'- ccC-GCUAUGAGUGGac--AgGACGCUGc -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 32799 | 0.66 | 0.69513 |
Target: 5'- cGGCGAUGCUCGgCgcGUUCcGCGAgGc -3' miRNA: 3'- cCCGCUAUGAGUgGa-CAGGaCGCUgC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 43080 | 0.74 | 0.264376 |
Target: 5'- gGGGUGGcccgagcUGCUCGCCUggauccgGUCCUGgGGCGu -3' miRNA: 3'- -CCCGCU-------AUGAGUGGA-------CAGGACgCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 15509 | 0.69 | 0.552895 |
Target: 5'- cGGGCGuUGCUC--UUGUCCUGCucgaucgccugGACGa -3' miRNA: 3'- -CCCGCuAUGAGugGACAGGACG-----------CUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 35876 | 0.71 | 0.393548 |
Target: 5'- gGGGCGucgucgccgacgagcUGCUCGCCgGUCgUGcCGACGg -3' miRNA: 3'- -CCCGCu--------------AUGAGUGGaCAGgAC-GCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 2160 | 1.12 | 0.000629 |
Target: 5'- cGGGCGAUACUCACCUGUCCUGCGACGa -3' miRNA: 3'- -CCCGCUAUGAGUGGACAGGACGCUGC- -5' |
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26326 | 5' | -55.2 | NC_005345.2 | + | 35284 | 0.66 | 0.716673 |
Target: 5'- cGGCGGaGCgagcugUACUUGUCCgcgaGCGugGg -3' miRNA: 3'- cCCGCUaUGa-----GUGGACAGGa---CGCugC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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