miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26327 3' -60.7 NC_005345.2 + 4785 0.66 0.388395
Target:  5'- cCUUUCCGGGCuc--GCCGCGGGUgGGg -3'
miRNA:   3'- -GAGGGGCUCGuccuUGGCGCCCAgUU- -5'
26327 3' -60.7 NC_005345.2 + 1742 0.66 0.388395
Target:  5'- -cCCCCGGGCAGGcaggcgacguuuGACCGUcGGcCAu -3'
miRNA:   3'- gaGGGGCUCGUCC------------UUGGCGcCCaGUu -5'
26327 3' -60.7 NC_005345.2 + 16336 0.66 0.385754
Target:  5'- gCUUCCCGAGUGccucgcGGAacgcgccgagcaucGCCGCGGcGUCGc -3'
miRNA:   3'- -GAGGGGCUCGU------CCU--------------UGGCGCC-CAGUu -5'
26327 3' -60.7 NC_005345.2 + 11175 0.66 0.37964
Target:  5'- -aCCCCGGcGCAGGu-CCGCagccuGGUCGAc -3'
miRNA:   3'- gaGGGGCU-CGUCCuuGGCGc----CCAGUU- -5'
26327 3' -60.7 NC_005345.2 + 16577 0.67 0.345968
Target:  5'- uCUCCuUCGAGC---GugCGCGGGUCAAc -3'
miRNA:   3'- -GAGG-GGCUCGuccUugGCGCCCAGUU- -5'
26327 3' -60.7 NC_005345.2 + 18951 0.67 0.345968
Target:  5'- gUCgCCCG-GCAGGGuccgaagcgcucGCCGCauGGGUCGc -3'
miRNA:   3'- gAG-GGGCuCGUCCU------------UGGCG--CCCAGUu -5'
26327 3' -60.7 NC_005345.2 + 23577 0.67 0.337891
Target:  5'- --gUCCGAGCuGcGGCUGCGGGUCGc -3'
miRNA:   3'- gagGGGCUCGuCcUUGGCGCCCAGUu -5'
26327 3' -60.7 NC_005345.2 + 23730 0.67 0.329953
Target:  5'- gCUUCCUG-GCGGGAAgaGCGGG-CAGa -3'
miRNA:   3'- -GAGGGGCuCGUCCUUggCGCCCaGUU- -5'
26327 3' -60.7 NC_005345.2 + 26767 0.68 0.299583
Target:  5'- gUCCCCGGcGCGGGuGCgGCGGaUCGu -3'
miRNA:   3'- gAGGGGCU-CGUCCuUGgCGCCcAGUu -5'
26327 3' -60.7 NC_005345.2 + 10302 0.68 0.292337
Target:  5'- --aCCCGAGCGGGAa--GCGGG-CAGa -3'
miRNA:   3'- gagGGGCUCGUCCUuggCGCCCaGUU- -5'
26327 3' -60.7 NC_005345.2 + 35304 0.69 0.245427
Target:  5'- gUCCgCGAGCguGGGGACC-CGGGUUg- -3'
miRNA:   3'- gAGGgGCUCG--UCCUUGGcGCCCAGuu -5'
26327 3' -60.7 NC_005345.2 + 18561 0.69 0.243563
Target:  5'- gCUCgCCGGGUgcgcgcccagcgucGGGAacACCGcCGGGUCGAa -3'
miRNA:   3'- -GAGgGGCUCG--------------UCCU--UGGC-GCCCAGUU- -5'
26327 3' -60.7 NC_005345.2 + 21683 0.69 0.23926
Target:  5'- gUUCCCGGGCAGGGGCU-CGGGcuugCAGu -3'
miRNA:   3'- gAGGGGCUCGUCCUUGGcGCCCa---GUU- -5'
26327 3' -60.7 NC_005345.2 + 963 1.05 0.000444
Target:  5'- gCUCCCCGAGCAGGAACCGCGGGUCAAu -3'
miRNA:   3'- -GAGGGGCUCGUCCUUGGCGCCCAGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.