miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26327 5' -54.7 NC_005345.2 + 29468 0.66 0.739618
Target:  5'- cGUCGgcCCGGUccaacucGUCGAGCUCGucGg -3'
miRNA:   3'- aCAGCa-GGCCAcc-----UAGCUCGAGCuuC- -5'
26327 5' -54.7 NC_005345.2 + 17349 0.66 0.72904
Target:  5'- cGUCGUCgagguCGGcGGAcuggUCGGGCUCGu-- -3'
miRNA:   3'- aCAGCAG-----GCCaCCU----AGCUCGAGCuuc -5'
26327 5' -54.7 NC_005345.2 + 42583 0.66 0.718365
Target:  5'- gGUCG-CCGGgcggcaGGAUCGAguacaGCUCGcGAGc -3'
miRNA:   3'- aCAGCaGGCCa-----CCUAGCU-----CGAGC-UUC- -5'
26327 5' -54.7 NC_005345.2 + 8563 0.66 0.707604
Target:  5'- cGUcCGUCgCGG-GGAUUGAgccGCUCGAc- -3'
miRNA:   3'- aCA-GCAG-GCCaCCUAGCU---CGAGCUuc -5'
26327 5' -54.7 NC_005345.2 + 7989 0.67 0.690236
Target:  5'- aGUCGaUCCGGUucaaccggcggccgcGGuuucaCGAGCUCGAc- -3'
miRNA:   3'- aCAGC-AGGCCA---------------CCua---GCUCGAGCUuc -5'
26327 5' -54.7 NC_005345.2 + 24784 0.68 0.646284
Target:  5'- cGUCGUCCgaccucggcaagguGGUgcagccgggcgaccGGAUCGuGCUCGGGu -3'
miRNA:   3'- aCAGCAGG--------------CCA--------------CCUAGCuCGAGCUUc -5'
26327 5' -54.7 NC_005345.2 + 48362 0.68 0.638552
Target:  5'- gGUC-UCCGGUGGggCGAggcgacggcgcugcGCUgGGAGa -3'
miRNA:   3'- aCAGcAGGCCACCuaGCU--------------CGAgCUUC- -5'
26327 5' -54.7 NC_005345.2 + 6873 0.68 0.638552
Target:  5'- aGUCG-CCGaugccgcugcgcauGUGGAUCGAGCagCGAc- -3'
miRNA:   3'- aCAGCaGGC--------------CACCUAGCUCGa-GCUuc -5'
26327 5' -54.7 NC_005345.2 + 35423 0.68 0.608731
Target:  5'- cGUCGUCCGGU---UCG-GCgUCGggGu -3'
miRNA:   3'- aCAGCAGGCCAccuAGCuCG-AGCuuC- -5'
26327 5' -54.7 NC_005345.2 + 26413 0.68 0.608731
Target:  5'- cGUCGUCCucgcGGAUCGuccacGGCUCGAc- -3'
miRNA:   3'- aCAGCAGGcca-CCUAGC-----UCGAGCUuc -5'
26327 5' -54.7 NC_005345.2 + 35911 0.69 0.543243
Target:  5'- -aUCGUCgGGUGGcUCGGGaCgcggCGAAGa -3'
miRNA:   3'- acAGCAGgCCACCuAGCUC-Ga---GCUUC- -5'
26327 5' -54.7 NC_005345.2 + 43135 0.7 0.511334
Target:  5'- cGUCGUacaCGGUGGuGUCGGGCUUc--- -3'
miRNA:   3'- aCAGCAg--GCCACC-UAGCUCGAGcuuc -5'
26327 5' -54.7 NC_005345.2 + 1006 1.09 0.001056
Target:  5'- gUGUCGUCCGGUGGAUCGAGCUCGAAGa -3'
miRNA:   3'- -ACAGCAGGCCACCUAGCUCGAGCUUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.