miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26330 5' -56.2 NC_005345.2 + 281 1.08 0.000743
Target:  5'- uCUCGUACACGGUAGGGCACGCAGCACc -3'
miRNA:   3'- -GAGCAUGUGCCAUCCCGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 8833 0.77 0.137915
Target:  5'- gCUCGUcugccgcggcugcgGCACGGUGaacGGGgGCGCGGCAUg -3'
miRNA:   3'- -GAGCA--------------UGUGCCAU---CCCgUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 44006 0.73 0.24575
Target:  5'- gCUCGUGCACGGUGucGGCGCucauGCcGCACc -3'
miRNA:   3'- -GAGCAUGUGCCAUc-CCGUG----CGuCGUG- -5'
26330 5' -56.2 NC_005345.2 + 39421 0.72 0.279573
Target:  5'- gUCG-GCGCGGUcGcGGCccGCGCGGCGCg -3'
miRNA:   3'- gAGCaUGUGCCAuC-CCG--UGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 31264 0.72 0.279573
Target:  5'- aCUCGggUGCGCGGgugcgGGGGCG-GguGCGCg -3'
miRNA:   3'- -GAGC--AUGUGCCa----UCCCGUgCguCGUG- -5'
26330 5' -56.2 NC_005345.2 + 10848 0.72 0.286767
Target:  5'- -cCGaGCuGCGGUGGGcggacugccGCACGCGGCGCg -3'
miRNA:   3'- gaGCaUG-UGCCAUCC---------CGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 37669 0.71 0.316213
Target:  5'- gCUCGUGC-CGGUGGcGCACGCgauugcuGGCAg -3'
miRNA:   3'- -GAGCAUGuGCCAUCcCGUGCG-------UCGUg -5'
26330 5' -56.2 NC_005345.2 + 35825 0.71 0.316997
Target:  5'- cCUCGgcccGCuCGGUGGGGUuCGgGGCACu -3'
miRNA:   3'- -GAGCa---UGuGCCAUCCCGuGCgUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 37505 0.7 0.384448
Target:  5'- -cCGgGCGCGGgcuGcGGCGCGguGCGCu -3'
miRNA:   3'- gaGCaUGUGCCau-C-CCGUGCguCGUG- -5'
26330 5' -56.2 NC_005345.2 + 42948 0.7 0.384448
Target:  5'- cCUCGcGgACGGgccgGGcGGCACGC-GCACg -3'
miRNA:   3'- -GAGCaUgUGCCa---UC-CCGUGCGuCGUG- -5'
26330 5' -56.2 NC_005345.2 + 22095 0.7 0.402733
Target:  5'- -cCGUugACGGUcggcggcucGGuGGCGaGCAGCACa -3'
miRNA:   3'- gaGCAugUGCCA---------UC-CCGUgCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 437 0.69 0.41208
Target:  5'- -aCGUAgUACGGgcGGGUcCGUGGCGCa -3'
miRNA:   3'- gaGCAU-GUGCCauCCCGuGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 5248 0.69 0.42156
Target:  5'- --gGUACACGGUGGGcGUgacGgGCGGCAg -3'
miRNA:   3'- gagCAUGUGCCAUCC-CG---UgCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 41965 0.69 0.460749
Target:  5'- -gCGcGCAUGGgcGacGGCACGUGGCGCa -3'
miRNA:   3'- gaGCaUGUGCCauC--CCGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 45834 0.69 0.460749
Target:  5'- -aCGUGCACGGcGGcGGCGCG-GGCGa -3'
miRNA:   3'- gaGCAUGUGCCaUC-CCGUGCgUCGUg -5'
26330 5' -56.2 NC_005345.2 + 32225 0.68 0.470846
Target:  5'- gCUCGUcCGCGGUgaccgcgaccGGGGUcaccACGC-GCACg -3'
miRNA:   3'- -GAGCAuGUGCCA----------UCCCG----UGCGuCGUG- -5'
26330 5' -56.2 NC_005345.2 + 7341 0.68 0.481053
Target:  5'- gUCGcACGCGGUGuGGCcCGCgguGGCGCa -3'
miRNA:   3'- gAGCaUGUGCCAUcCCGuGCG---UCGUG- -5'
26330 5' -56.2 NC_005345.2 + 10663 0.68 0.501782
Target:  5'- -gCGgAC-CGGUGGGGC--GCGGCGCg -3'
miRNA:   3'- gaGCaUGuGCCAUCCCGugCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 2397 0.68 0.512293
Target:  5'- -gUGUuCGCGGgugugcUGGGGUGCuGCAGCGCg -3'
miRNA:   3'- gaGCAuGUGCC------AUCCCGUG-CGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 28704 0.67 0.531435
Target:  5'- aCUCGgGCGCGGaccucuuccacgGGGGCAgGUacGGCGCc -3'
miRNA:   3'- -GAGCaUGUGCCa-----------UCCCGUgCG--UCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.