miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26330 5' -56.2 NC_005345.2 + 281 1.08 0.000743
Target:  5'- uCUCGUACACGGUAGGGCACGCAGCACc -3'
miRNA:   3'- -GAGCAUGUGCCAUCCCGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 437 0.69 0.41208
Target:  5'- -aCGUAgUACGGgcGGGUcCGUGGCGCa -3'
miRNA:   3'- gaGCAU-GUGCCauCCCGuGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 2033 0.66 0.599031
Target:  5'- cCUCGUcgagcgggcccgGCGCGGcccggcGGGC-CGCGGCGa -3'
miRNA:   3'- -GAGCA------------UGUGCCau----CCCGuGCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 2397 0.68 0.512293
Target:  5'- -gUGUuCGCGGgugugcUGGGGUGCuGCAGCGCg -3'
miRNA:   3'- gaGCAuGUGCC------AUCCCGUG-CGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 5248 0.69 0.42156
Target:  5'- --gGUACACGGUGGGcGUgacGgGCGGCAg -3'
miRNA:   3'- gagCAUGUGCCAUCC-CG---UgCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 6541 0.67 0.544339
Target:  5'- -gCGgggcgGgGCGGUGGGGgACGUGGCuACg -3'
miRNA:   3'- gaGCa----UgUGCCAUCCCgUGCGUCG-UG- -5'
26330 5' -56.2 NC_005345.2 + 7341 0.68 0.481053
Target:  5'- gUCGcACGCGGUGuGGCcCGCgguGGCGCa -3'
miRNA:   3'- gAGCaUGUGCCAUcCCGuGCG---UCGUG- -5'
26330 5' -56.2 NC_005345.2 + 8298 0.67 0.555169
Target:  5'- -cCGUGCuguUGGgcgccaUGGcGGCGCGCAGCAg -3'
miRNA:   3'- gaGCAUGu--GCC------AUC-CCGUGCGUCGUg -5'
26330 5' -56.2 NC_005345.2 + 8833 0.77 0.137915
Target:  5'- gCUCGUcugccgcggcugcgGCACGGUGaacGGGgGCGCGGCAUg -3'
miRNA:   3'- -GAGCA--------------UGUGCCAU---CCCgUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 10593 0.67 0.533578
Target:  5'- -cCGUGC-CGGU-GGGCGCGUA-CGCc -3'
miRNA:   3'- gaGCAUGuGCCAuCCCGUGCGUcGUG- -5'
26330 5' -56.2 NC_005345.2 + 10663 0.68 0.501782
Target:  5'- -gCGgAC-CGGUGGGGC--GCGGCGCg -3'
miRNA:   3'- gaGCaUGuGCCAUCCCGugCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 10848 0.72 0.286767
Target:  5'- -cCGaGCuGCGGUGGGcggacugccGCACGCGGCGCg -3'
miRNA:   3'- gaGCaUG-UGCCAUCC---------CGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 12617 0.66 0.632257
Target:  5'- gCUCGgccggGCACGGcucGGGCACcgggccucggaGCGGgCGCa -3'
miRNA:   3'- -GAGCa----UGUGCCau-CCCGUG-----------CGUC-GUG- -5'
26330 5' -56.2 NC_005345.2 + 18535 0.66 0.588001
Target:  5'- -aUGUGCAcCGGU-GGGCugcuCGgGGCGCu -3'
miRNA:   3'- gaGCAUGU-GCCAuCCCGu---GCgUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 19434 0.67 0.533578
Target:  5'- gUCGgucGCAcCGGgcucGGGCA-GCAGCGCg -3'
miRNA:   3'- gAGCa--UGU-GCCau--CCCGUgCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 20321 0.67 0.566061
Target:  5'- -gCGUcCACGGcgaUGGgcaGGCGCGCGGUGCg -3'
miRNA:   3'- gaGCAuGUGCC---AUC---CCGUGCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 22095 0.7 0.402733
Target:  5'- -cCGUugACGGUcggcggcucGGuGGCGaGCAGCACa -3'
miRNA:   3'- gaGCAugUGCCA---------UC-CCGUgCGUCGUG- -5'
26330 5' -56.2 NC_005345.2 + 22328 0.66 0.610091
Target:  5'- uUCGggucUGCACGuGUGGGG-GCGCGGguCg -3'
miRNA:   3'- gAGC----AUGUGC-CAUCCCgUGCGUCguG- -5'
26330 5' -56.2 NC_005345.2 + 23675 0.66 0.621169
Target:  5'- gUCGcgGC-CGGUcGGGCGgGCcgAGCGCa -3'
miRNA:   3'- gAGCa-UGuGCCAuCCCGUgCG--UCGUG- -5'
26330 5' -56.2 NC_005345.2 + 27038 0.67 0.533578
Target:  5'- gUCGUGC-CGGUcguuGuGGcCACGCAGgCGCa -3'
miRNA:   3'- gAGCAUGuGCCAu---C-CC-GUGCGUC-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.