miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26331 5' -50.5 NC_005345.2 + 45816 0.66 0.931645
Target:  5'- ---aGUUCGGGcugagaGAGGCGGCGGGCGcGg -3'
miRNA:   3'- cacaCAAGUUCc-----UUCUGCUGCUCGC-C- -5'
26331 5' -50.5 NC_005345.2 + 14297 0.66 0.931645
Target:  5'- -cGUGcgCAGGGc-GGCGGCGAG-GGc -3'
miRNA:   3'- caCACaaGUUCCuuCUGCUGCUCgCC- -5'
26331 5' -50.5 NC_005345.2 + 18755 0.66 0.925828
Target:  5'- -----aUCA-GGAAGACGACGA-CGGc -3'
miRNA:   3'- cacacaAGUuCCUUCUGCUGCUcGCC- -5'
26331 5' -50.5 NC_005345.2 + 47721 0.66 0.919715
Target:  5'- -cGUGccgUC--GGAcugGGACGACGAGgGGa -3'
miRNA:   3'- caCACa--AGuuCCU---UCUGCUGCUCgCC- -5'
26331 5' -50.5 NC_005345.2 + 11836 0.66 0.906608
Target:  5'- -cGUGggCGAGGucGACGccACGGcGUGGg -3'
miRNA:   3'- caCACaaGUUCCuuCUGC--UGCU-CGCC- -5'
26331 5' -50.5 NC_005345.2 + 3828 0.66 0.906608
Target:  5'- -cGUccgcugCGAGGucGGCGGCGuGCGGa -3'
miRNA:   3'- caCAcaa---GUUCCuuCUGCUGCuCGCC- -5'
26331 5' -50.5 NC_005345.2 + 13391 0.67 0.892342
Target:  5'- cUGUcGggCGAGGgcG-CGGCGGGUGGc -3'
miRNA:   3'- cACA-CaaGUUCCuuCuGCUGCUCGCC- -5'
26331 5' -50.5 NC_005345.2 + 17328 0.67 0.884784
Target:  5'- gGUGaGUUCGGGGAu--CGGCGGGUGc -3'
miRNA:   3'- -CACaCAAGUUCCUucuGCUGCUCGCc -5'
26331 5' -50.5 NC_005345.2 + 18343 0.67 0.884784
Target:  5'- -gGUGcUCcGGGugcGGGCGACGGcGCGGc -3'
miRNA:   3'- caCACaAGuUCCu--UCUGCUGCU-CGCC- -5'
26331 5' -50.5 NC_005345.2 + 34474 0.67 0.884784
Target:  5'- -gGUGUUCAAGcGGcAGGCGAUgcaGAGCa- -3'
miRNA:   3'- caCACAAGUUC-CU-UCUGCUG---CUCGcc -5'
26331 5' -50.5 NC_005345.2 + 37202 0.67 0.87695
Target:  5'- -gGUGcugUCGGGGcccauGGCGACGAGCu- -3'
miRNA:   3'- caCACa--AGUUCCuu---CUGCUGCUCGcc -5'
26331 5' -50.5 NC_005345.2 + 5236 0.67 0.868846
Target:  5'- ----cUUCGAGGgcGGCGACGAGUc- -3'
miRNA:   3'- cacacAAGUUCCuuCUGCUGCUCGcc -5'
26331 5' -50.5 NC_005345.2 + 34403 0.68 0.851858
Target:  5'- --cUGggCAAGGuGGGCGGCGccGCGGa -3'
miRNA:   3'- cacACaaGUUCCuUCUGCUGCu-CGCC- -5'
26331 5' -50.5 NC_005345.2 + 30420 0.68 0.842991
Target:  5'- -cGUcGggCAGGGu-GACGGCGGcGCGGg -3'
miRNA:   3'- caCA-CaaGUUCCuuCUGCUGCU-CGCC- -5'
26331 5' -50.5 NC_005345.2 + 19568 0.68 0.833887
Target:  5'- -----aUCGAGGGAGACG--GGGCGGg -3'
miRNA:   3'- cacacaAGUUCCUUCUGCugCUCGCC- -5'
26331 5' -50.5 NC_005345.2 + 13139 0.68 0.833887
Target:  5'- -cGUGcgUCAAGGggGcUGACGccgaguccgcucGGCGGa -3'
miRNA:   3'- caCACa-AGUUCCuuCuGCUGC------------UCGCC- -5'
26331 5' -50.5 NC_005345.2 + 41267 0.68 0.833887
Target:  5'- -cGUG-UCGGGGAc--CGGCGGGUGGg -3'
miRNA:   3'- caCACaAGUUCCUucuGCUGCUCGCC- -5'
26331 5' -50.5 NC_005345.2 + 7234 0.69 0.785189
Target:  5'- -gGUGUcgUCGgcgacgaccAGGgcGACGACGAGCa- -3'
miRNA:   3'- caCACA--AGU---------UCCuuCUGCUGCUCGcc -5'
26331 5' -50.5 NC_005345.2 + 19991 0.7 0.753839
Target:  5'- ---gGUUCGccGAGGGCGACaGGCGGg -3'
miRNA:   3'- cacaCAAGUucCUUCUGCUGcUCGCC- -5'
26331 5' -50.5 NC_005345.2 + 12189 0.7 0.743107
Target:  5'- aUGg---CAGGGAcucGACGACGAGCGa -3'
miRNA:   3'- cACacaaGUUCCUu--CUGCUGCUCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.