Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26339 | 5' | -57.4 | NC_005345.2 | + | 13200 | 0.66 | 0.589979 |
Target: 5'- aGCGGcaGCCCGCGCG-GCgaGCACa -3' miRNA: 3'- gUGCCucUGGGUGUGCaCGagCGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 631 | 0.66 | 0.579118 |
Target: 5'- gGCGaGGACCCGUACGacCUCGCGCc -3' miRNA: 3'- gUGCcUCUGGGUGUGCacGAGCGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 16338 | 0.66 | 0.579118 |
Target: 5'- gUACGGAGACCgGCcCGcagGCUggggGCGCUg -3' miRNA: 3'- -GUGCCUCUGGgUGuGCa--CGAg---CGUGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 18925 | 0.66 | 0.546825 |
Target: 5'- uCGCGG---CCCGCACcUGCUCGC-CUg -3' miRNA: 3'- -GUGCCucuGGGUGUGcACGAGCGuGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 41130 | 0.66 | 0.546825 |
Target: 5'- gUACGGGGcuCCgACugGcgGCUCGcCACUg -3' miRNA: 3'- -GUGCCUCu-GGgUGugCa-CGAGC-GUGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 7098 | 0.67 | 0.515127 |
Target: 5'- gACGGucgaaacGGCCCGCgACGUGUggcgcCGCGCg -3' miRNA: 3'- gUGCCu------CUGGGUG-UGCACGa----GCGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 37837 | 0.67 | 0.504724 |
Target: 5'- -cCGGGGGCCCugACuGUGCggUCGguCg -3' miRNA: 3'- guGCCUCUGGGugUG-CACG--AGCguGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 32786 | 0.67 | 0.494413 |
Target: 5'- aGCGGcGACgCCGCgGCGaUGCUCgGCGCg -3' miRNA: 3'- gUGCCuCUG-GGUG-UGC-ACGAG-CGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 7224 | 0.67 | 0.484198 |
Target: 5'- aGCGGGuccGACCCGucccgggcCACGUGCcccgcccgguUCGCGCg -3' miRNA: 3'- gUGCCU---CUGGGU--------GUGCACG----------AGCGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 32459 | 0.68 | 0.44441 |
Target: 5'- uCACGGAcGACCCGCAgGcGgUCGuCACc -3' miRNA: 3'- -GUGCCU-CUGGGUGUgCaCgAGC-GUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 19470 | 0.68 | 0.434751 |
Target: 5'- uCACGGAGcACCC-CGCGgGUggGCACg -3' miRNA: 3'- -GUGCCUC-UGGGuGUGCaCGagCGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 19043 | 0.68 | 0.434751 |
Target: 5'- aGCGGcGACCCAUGCG-GCgaGCGCUu -3' miRNA: 3'- gUGCCuCUGGGUGUGCaCGagCGUGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 466 | 0.68 | 0.434751 |
Target: 5'- cCGCGGGugcacGACCUucgcCACGUGUUCGcCACg -3' miRNA: 3'- -GUGCCU-----CUGGGu---GUGCACGAGC-GUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 22135 | 0.69 | 0.406523 |
Target: 5'- gCGCGGugugccGGACCCAcCGCGgucgGCUCGUgaGCUc -3' miRNA: 3'- -GUGCC------UCUGGGU-GUGCa---CGAGCG--UGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 44985 | 0.69 | 0.388355 |
Target: 5'- gGCGGGGugCU-CACG-GCUCGgGCUg -3' miRNA: 3'- gUGCCUCugGGuGUGCaCGAGCgUGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 43227 | 0.69 | 0.379473 |
Target: 5'- cCACGGcGACCCGCuguCGUgGCcCGCAUUc -3' miRNA: 3'- -GUGCCuCUGGGUGu--GCA-CGaGCGUGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 31456 | 0.69 | 0.370728 |
Target: 5'- uCGCcGAGGCCgGCGCG-GUUCGUACg -3' miRNA: 3'- -GUGcCUCUGGgUGUGCaCGAGCGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 40680 | 0.7 | 0.362122 |
Target: 5'- uCGCGGAGAggUACAcccCGUGCUCGCcgGCUg -3' miRNA: 3'- -GUGCCUCUggGUGU---GCACGAGCG--UGA- -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 16044 | 0.7 | 0.357026 |
Target: 5'- gUACGGAcGACCUcggcgacgaucgcggGCAgCGUGCUCaGCACg -3' miRNA: 3'- -GUGCCU-CUGGG---------------UGU-GCACGAG-CGUGa -5' |
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26339 | 5' | -57.4 | NC_005345.2 | + | 9796 | 0.71 | 0.305836 |
Target: 5'- gCGCGGucgcGGCCCGCGCGgcgcgGCUCaCGCg -3' miRNA: 3'- -GUGCCu---CUGGGUGUGCa----CGAGcGUGa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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