miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26355 3' -61 NC_005345.2 + 17871 0.66 0.386311
Target:  5'- ----cCGUGGCGc-GCaCCCGCCCCCg -3'
miRNA:   3'- auccuGCACCGUcuCGaGGGUGGGGG- -5'
26355 3' -61 NC_005345.2 + 13719 0.66 0.385436
Target:  5'- cAGGAuCGUGcgccacacguacuGCAGGGCggugCCgACCgCCCg -3'
miRNA:   3'- aUCCU-GCAC-------------CGUCUCGa---GGgUGG-GGG- -5'
26355 3' -61 NC_005345.2 + 39002 0.66 0.377612
Target:  5'- -cGGGCGcuccGCAGAGCggCCGCCgCCu -3'
miRNA:   3'- auCCUGCac--CGUCUCGagGGUGGgGG- -5'
26355 3' -61 NC_005345.2 + 4002 0.66 0.377612
Target:  5'- -cGGACGagccGCAGcGCguccgcguugUCCCGCCCCUg -3'
miRNA:   3'- auCCUGCac--CGUCuCG----------AGGGUGGGGG- -5'
26355 3' -61 NC_005345.2 + 8864 0.66 0.369046
Target:  5'- gGGGGCGcGGCAuGAcGCUCUCcggacucauGCCCgCCg -3'
miRNA:   3'- aUCCUGCaCCGU-CU-CGAGGG---------UGGG-GG- -5'
26355 3' -61 NC_005345.2 + 10381 0.66 0.369046
Target:  5'- gAGGGCGUcggugccccacGGCGuGAGCcgggcgagggUCgCCACCCCg -3'
miRNA:   3'- aUCCUGCA-----------CCGU-CUCG----------AG-GGUGGGGg -5'
26355 3' -61 NC_005345.2 + 34919 0.66 0.360614
Target:  5'- gAGGGCGUGcGCAGGGCggcggcgagggCCUGCUCg- -3'
miRNA:   3'- aUCCUGCAC-CGUCUCGa----------GGGUGGGgg -5'
26355 3' -61 NC_005345.2 + 47361 0.66 0.360614
Target:  5'- gGGGuACGgucGGUcGAGCggccugCCCuCCCCCa -3'
miRNA:   3'- aUCC-UGCa--CCGuCUCGa-----GGGuGGGGG- -5'
26355 3' -61 NC_005345.2 + 6883 0.67 0.341735
Target:  5'- gAGGugGacGGCGGAauggucaugaucacGUUCCCGCCCg- -3'
miRNA:   3'- aUCCugCa-CCGUCU--------------CGAGGGUGGGgg -5'
26355 3' -61 NC_005345.2 + 29536 0.67 0.328246
Target:  5'- gAGGAaGUgaucaGGCAGGuGUUCCCGCucgCCCCg -3'
miRNA:   3'- aUCCUgCA-----CCGUCU-CGAGGGUG---GGGG- -5'
26355 3' -61 NC_005345.2 + 15705 0.67 0.328246
Target:  5'- cAGGugGUGacacaccuuGCGG-GCcgCCCGCCaCCCu -3'
miRNA:   3'- aUCCugCAC---------CGUCuCGa-GGGUGG-GGG- -5'
26355 3' -61 NC_005345.2 + 292 0.67 0.328246
Target:  5'- gUAGGGCac-GCAGcaccGC-CCCGCCCCCc -3'
miRNA:   3'- -AUCCUGcacCGUCu---CGaGGGUGGGGG- -5'
26355 3' -61 NC_005345.2 + 12157 0.67 0.320497
Target:  5'- aGGGAgcUGcGCacGGGGCUCgCCGCCCUCg -3'
miRNA:   3'- aUCCUgcAC-CG--UCUCGAG-GGUGGGGG- -5'
26355 3' -61 NC_005345.2 + 434 0.67 0.305413
Target:  5'- -cGGACGUaguacgGGCGGguccguGGCgcauaCCCGCCCCUu -3'
miRNA:   3'- auCCUGCA------CCGUC------UCGa----GGGUGGGGG- -5'
26355 3' -61 NC_005345.2 + 3283 0.68 0.290879
Target:  5'- --cGACG-GcGUcGGGCUcCCCGCCCCCa -3'
miRNA:   3'- aucCUGCaC-CGuCUCGA-GGGUGGGGG- -5'
26355 3' -61 NC_005345.2 + 48854 0.68 0.286626
Target:  5'- gGGGGCGgGGCGGuGCUgcgugcCCUaccguguacgagaagACCCCCg -3'
miRNA:   3'- aUCCUGCaCCGUCuCGA------GGG---------------UGGGGG- -5'
26355 3' -61 NC_005345.2 + 34636 0.68 0.270103
Target:  5'- cGGGGCGUGGCu--GCUgCCGCUCg- -3'
miRNA:   3'- aUCCUGCACCGucuCGAgGGUGGGgg -5'
26355 3' -61 NC_005345.2 + 7649 0.69 0.249907
Target:  5'- gAGG-CGUgcGGCAGAGCggCCgcugugaaggggaGCCCCCa -3'
miRNA:   3'- aUCCuGCA--CCGUCUCGagGG-------------UGGGGG- -5'
26355 3' -61 NC_005345.2 + 43861 0.69 0.246768
Target:  5'- cGGGGCGUcggccgggacuccgcGGCGGAGCgcgUCCCGCUgCa -3'
miRNA:   3'- aUCCUGCA---------------CCGUCUCG---AGGGUGGgGg -5'
26355 3' -61 NC_005345.2 + 30112 0.69 0.238155
Target:  5'- cAGGGCGgcgaGGCGGAGCagcggCCCgagggcggcgcGCCaCCCg -3'
miRNA:   3'- aUCCUGCa---CCGUCUCGa----GGG-----------UGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.