miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26374 5' -54.4 NC_005345.2 + 22552 1.11 0.000864
Target:  5'- aGCCAUGGCGCGCGUACGUGAACGAGAc -3'
miRNA:   3'- -CGGUACCGCGCGCAUGCACUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 621 0.78 0.178335
Target:  5'- aCCAUGGUGCggaucGCGUccucggccugcgGCGUGAGCGGGAc -3'
miRNA:   3'- cGGUACCGCG-----CGCA------------UGCACUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 35004 0.74 0.309221
Target:  5'- cGCCggGGCGCuGCGgcggccACGUGGggGCGGGAc -3'
miRNA:   3'- -CGGuaCCGCG-CGCa-----UGCACU--UGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 9990 0.72 0.412081
Target:  5'- cGUCAUGGUGCGacacgGCGccggUGAGCGGGAg -3'
miRNA:   3'- -CGGUACCGCGCgca--UGC----ACUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 47926 0.71 0.450768
Target:  5'- aGCCAUGGgacccguacCGCGCG-GCGUGGcccGCGGGc -3'
miRNA:   3'- -CGGUACC---------GCGCGCaUGCACU---UGCUCu -5'
26374 5' -54.4 NC_005345.2 + 40342 0.71 0.450768
Target:  5'- cGCCGUGGCGgGCGacgggUACGgccguggGGGCGAu- -3'
miRNA:   3'- -CGGUACCGCgCGC-----AUGCa------CUUGCUcu -5'
26374 5' -54.4 NC_005345.2 + 36516 0.7 0.491367
Target:  5'- cGCCccGGCGaacugGCGUGgGUGGGCGAa- -3'
miRNA:   3'- -CGGuaCCGCg----CGCAUgCACUUGCUcu -5'
26374 5' -54.4 NC_005345.2 + 23774 0.7 0.491367
Target:  5'- uGCCGUGGCGCGgccCGgaGCaUGAGgGAGAg -3'
miRNA:   3'- -CGGUACCGCGC---GCa-UGcACUUgCUCU- -5'
26374 5' -54.4 NC_005345.2 + 6826 0.7 0.527158
Target:  5'- cGCCAUGGCGgGCGggaucgacaugguccUcGCGgcgacGGACGGGAa -3'
miRNA:   3'- -CGGUACCGCgCGC---------------A-UGCa----CUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 39910 0.69 0.566062
Target:  5'- aCCGUGGuCGCgGCGUACGacuUGAGCGu-- -3'
miRNA:   3'- cGGUACC-GCG-CGCAUGC---ACUUGCucu -5'
26374 5' -54.4 NC_005345.2 + 28115 0.68 0.599031
Target:  5'- cGCC--GGCGCGCGUGCcgagGAACGc-- -3'
miRNA:   3'- -CGGuaCCGCGCGCAUGca--CUUGCucu -5'
26374 5' -54.4 NC_005345.2 + 10596 0.68 0.610091
Target:  5'- uGCCgGUGG-GCGCGUACGc---CGAGAc -3'
miRNA:   3'- -CGG-UACCgCGCGCAUGCacuuGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 4235 0.68 0.632257
Target:  5'- aGCCgAUGGuCGcCGC-UGCG-GAGCGGGAc -3'
miRNA:   3'- -CGG-UACC-GC-GCGcAUGCaCUUGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 16562 0.68 0.632258
Target:  5'- gGUCAUGgGCGCGgGUcuccuucgaGCGUGcGCGGGu -3'
miRNA:   3'- -CGGUAC-CGCGCgCA---------UGCACuUGCUCu -5'
26374 5' -54.4 NC_005345.2 + 31264 0.68 0.632258
Target:  5'- aCUcgGGUGCGCGggUGCGgGGGCGGGu -3'
miRNA:   3'- cGGuaCCGCGCGC--AUGCaCUUGCUCu -5'
26374 5' -54.4 NC_005345.2 + 30306 0.68 0.654423
Target:  5'- aGCCcgGUGGCG-GCGUACGcaacGGuCGAGGa -3'
miRNA:   3'- -CGG--UACCGCgCGCAUGCa---CUuGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 29298 0.67 0.66548
Target:  5'- cGCCcgaGGCaGCGCGcuCGUGAACGcGAc -3'
miRNA:   3'- -CGGua-CCG-CGCGCauGCACUUGCuCU- -5'
26374 5' -54.4 NC_005345.2 + 8686 0.67 0.66548
Target:  5'- gGCgGUGGC-CGUG-ACGUGGGCGGc- -3'
miRNA:   3'- -CGgUACCGcGCGCaUGCACUUGCUcu -5'
26374 5' -54.4 NC_005345.2 + 30741 0.67 0.665481
Target:  5'- gGCCGUGaGCGCGaGgccgGCGaGggUGAGGg -3'
miRNA:   3'- -CGGUAC-CGCGCgCa---UGCaCuuGCUCU- -5'
26374 5' -54.4 NC_005345.2 + 33188 0.67 0.676505
Target:  5'- cGCCAacUGGCaGCGCGc----GAACGAGGg -3'
miRNA:   3'- -CGGU--ACCG-CGCGCaugcaCUUGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.