Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26374 | 5' | -54.4 | NC_005345.2 | + | 29298 | 0.67 | 0.66548 |
Target: 5'- cGCCcgaGGCaGCGCGcuCGUGAACGcGAc -3' miRNA: 3'- -CGGua-CCG-CGCGCauGCACUUGCuCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 40342 | 0.71 | 0.450768 |
Target: 5'- cGCCGUGGCGgGCGacgggUACGgccguggGGGCGAu- -3' miRNA: 3'- -CGGUACCGCgCGC-----AUGCa------CUUGCUcu -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 47926 | 0.71 | 0.450768 |
Target: 5'- aGCCAUGGgacccguacCGCGCG-GCGUGGcccGCGGGc -3' miRNA: 3'- -CGGUACC---------GCGCGCaUGCACU---UGCUCu -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 23774 | 0.7 | 0.491367 |
Target: 5'- uGCCGUGGCGCGgccCGgaGCaUGAGgGAGAg -3' miRNA: 3'- -CGGUACCGCGC---GCa-UGcACUUgCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 36516 | 0.7 | 0.491367 |
Target: 5'- cGCCccGGCGaacugGCGUGgGUGGGCGAa- -3' miRNA: 3'- -CGGuaCCGCg----CGCAUgCACUUGCUcu -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 6826 | 0.7 | 0.527158 |
Target: 5'- cGCCAUGGCGgGCGggaucgacaugguccUcGCGgcgacGGACGGGAa -3' miRNA: 3'- -CGGUACCGCgCGC---------------A-UGCa----CUUGCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 28115 | 0.68 | 0.599031 |
Target: 5'- cGCC--GGCGCGCGUGCcgagGAACGc-- -3' miRNA: 3'- -CGGuaCCGCGCGCAUGca--CUUGCucu -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 4235 | 0.68 | 0.632257 |
Target: 5'- aGCCgAUGGuCGcCGC-UGCG-GAGCGGGAc -3' miRNA: 3'- -CGG-UACC-GC-GCGcAUGCaCUUGCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 30306 | 0.68 | 0.654423 |
Target: 5'- aGCCcgGUGGCG-GCGUACGcaacGGuCGAGGa -3' miRNA: 3'- -CGG--UACCGCgCGCAUGCa---CUuGCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 621 | 0.78 | 0.178335 |
Target: 5'- aCCAUGGUGCggaucGCGUccucggccugcgGCGUGAGCGGGAc -3' miRNA: 3'- cGGUACCGCG-----CGCA------------UGCACUUGCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 22552 | 1.11 | 0.000864 |
Target: 5'- aGCCAUGGCGCGCGUACGUGAACGAGAc -3' miRNA: 3'- -CGGUACCGCGCGCAUGCACUUGCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 22264 | 0.66 | 0.759115 |
Target: 5'- uGCCGUgGGCGCagcggaucgucgagGCGgccggggcgACGUGGGuCGAGGu -3' miRNA: 3'- -CGGUA-CCGCG--------------CGCa--------UGCACUU-GCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 33188 | 0.67 | 0.676505 |
Target: 5'- cGCCAacUGGCaGCGCGc----GAACGAGGg -3' miRNA: 3'- -CGGU--ACCG-CGCGCaugcaCUUGCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 39352 | 0.67 | 0.698417 |
Target: 5'- cGgCGUGGcCGUGCGcUACGaGAuCGAGAu -3' miRNA: 3'- -CgGUACC-GCGCGC-AUGCaCUuGCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 20422 | 0.66 | 0.730764 |
Target: 5'- cGCCGUGG-GCGCcGUAccugccccCGUGGAaGAGGu -3' miRNA: 3'- -CGGUACCgCGCG-CAU--------GCACUUgCUCU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 5604 | 0.67 | 0.70928 |
Target: 5'- uGCCGUGGgGCGCcGggcuCGUGGcCGAc- -3' miRNA: 3'- -CGGUACCgCGCG-Cau--GCACUuGCUcu -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 14791 | 0.66 | 0.730764 |
Target: 5'- cGCCccGGUGCGCuucgACGUcGAGCGGcGGg -3' miRNA: 3'- -CGGuaCCGCGCGca--UGCA-CUUGCU-CU- -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 8686 | 0.67 | 0.66548 |
Target: 5'- gGCgGUGGC-CGUG-ACGUGGGCGGc- -3' miRNA: 3'- -CGgUACCGcGCGCaUGCACUUGCUcu -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 16562 | 0.68 | 0.632258 |
Target: 5'- gGUCAUGgGCGCGgGUcuccuucgaGCGUGcGCGGGu -3' miRNA: 3'- -CGGUAC-CGCGCgCA---------UGCACuUGCUCu -5' |
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26374 | 5' | -54.4 | NC_005345.2 | + | 10596 | 0.68 | 0.610091 |
Target: 5'- uGCCgGUGG-GCGCGUACGc---CGAGAc -3' miRNA: 3'- -CGG-UACCgCGCGCAUGCacuuGCUCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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