miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26375 5' -53.9 NC_005345.2 + 28038 0.66 0.768866
Target:  5'- uCGaCGUCGUCGagcuuUCGGCG-GGugUACu- -3'
miRNA:   3'- -GC-GCAGUAGC-----AGCCGUaCCugAUGcc -5'
26375 5' -53.9 NC_005345.2 + 28853 0.67 0.737882
Target:  5'- cCGCaGUCGUCcgggggcucuUCGGCG-GGcACUACGGg -3'
miRNA:   3'- -GCG-CAGUAGc---------AGCCGUaCC-UGAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 29439 0.71 0.531485
Target:  5'- gGCGUCGUCcUCGGCGUcGAg-GCGGu -3'
miRNA:   3'- gCGCAGUAGcAGCCGUAcCUgaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 29524 0.73 0.41104
Target:  5'- -aUGUCGUCGUCGGCGUcgaGGuACU-CGGg -3'
miRNA:   3'- gcGCAGUAGCAGCCGUA---CC-UGAuGCC- -5'
26375 5' -53.9 NC_005345.2 + 31214 0.67 0.737882
Target:  5'- uGCG-CAccCGggugCGGCcgGGugUACGGc -3'
miRNA:   3'- gCGCaGUa-GCa---GCCGuaCCugAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 32972 0.69 0.655798
Target:  5'- cCGCGUCcgCGUaguccucggcgcaggCGGCcgGGGugGCGGg -3'
miRNA:   3'- -GCGCAGuaGCA---------------GCCGuaCCUgaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 33015 0.66 0.788837
Target:  5'- gGCGUCGacgaUCGggcUCGGCcgcGGGgUGCGGu -3'
miRNA:   3'- gCGCAGU----AGC---AGCCGua-CCUgAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 34371 0.67 0.748332
Target:  5'- uCGCGauggaccCGUCGUCGGCGgucuccgcgcUGGGCaagguggGCGGc -3'
miRNA:   3'- -GCGCa------GUAGCAGCCGU----------ACCUGa------UGCC- -5'
26375 5' -53.9 NC_005345.2 + 35905 0.69 0.6514
Target:  5'- gGCGgCAUCGUCGG-GUGG-CU-CGGg -3'
miRNA:   3'- gCGCaGUAGCAGCCgUACCuGAuGCC- -5'
26375 5' -53.9 NC_005345.2 + 36922 0.67 0.738932
Target:  5'- gCGgGUCAUCGccacggcucgggaggCGGCGgccGGACaGCGGc -3'
miRNA:   3'- -GCgCAGUAGCa--------------GCCGUa--CCUGaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 37270 0.68 0.662386
Target:  5'- uCGCGUCGUCGUCGag--GGGC-ACGu -3'
miRNA:   3'- -GCGCAGUAGCAGCcguaCCUGaUGCc -5'
26375 5' -53.9 NC_005345.2 + 37677 0.71 0.510382
Target:  5'- gCGCGgcccugauGUCGUCGGcCGUGGGCcgccaguccUGCGGg -3'
miRNA:   3'- -GCGCag------UAGCAGCC-GUACCUG---------AUGCC- -5'
26375 5' -53.9 NC_005345.2 + 38029 0.66 0.817542
Target:  5'- cCGCGUggaCGUCGacucugUGGCAUcGGAUcGCGGu -3'
miRNA:   3'- -GCGCA---GUAGCa-----GCCGUA-CCUGaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 43853 0.71 0.489637
Target:  5'- cCG-GUCGacggggCGUCGGCcgGGACUccGCGGc -3'
miRNA:   3'- -GCgCAGUa-----GCAGCCGuaCCUGA--UGCC- -5'
26375 5' -53.9 NC_005345.2 + 45118 0.66 0.767852
Target:  5'- gGCGcCGUCGUCgcacaggGGCG-GGACaacGCGGa -3'
miRNA:   3'- gCGCaGUAGCAG-------CCGUaCCUGa--UGCC- -5'
26375 5' -53.9 NC_005345.2 + 45347 0.72 0.449392
Target:  5'- -cCGUCGUCGcacCGGUGUGGACcgUGCGGc -3'
miRNA:   3'- gcGCAGUAGCa--GCCGUACCUG--AUGCC- -5'
26375 5' -53.9 NC_005345.2 + 48420 0.71 0.499962
Target:  5'- aGCGgcaCGUCGaCGGCGUGGGCgaucUGGa -3'
miRNA:   3'- gCGCa--GUAGCaGCCGUACCUGau--GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.