Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26375 | 5' | -53.9 | NC_005345.2 | + | 634 | 0.72 | 0.469294 |
Target: 5'- uCGCGUCcUCGgccugCGGCGUgagcgGGACcgUGCGGa -3' miRNA: 3'- -GCGCAGuAGCa----GCCGUA-----CCUG--AUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 3308 | 0.7 | 0.563698 |
Target: 5'- gGCGUCGgcgagugcuUCGagggUGGCGUcacucGGGCUGCGGg -3' miRNA: 3'- gCGCAGU---------AGCa---GCCGUA-----CCUGAUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 3400 | 0.66 | 0.775925 |
Target: 5'- gCGCGgCAUCccccucgacgacguGUCGGUGUGGACgcUGCGc -3' miRNA: 3'- -GCGCaGUAG--------------CAGCCGUACCUG--AUGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 4212 | 0.67 | 0.727325 |
Target: 5'- cCGCGcC--UGUUGGCGUGGAagggggGCGGg -3' miRNA: 3'- -GCGCaGuaGCAGCCGUACCUga----UGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 8127 | 0.7 | 0.585462 |
Target: 5'- cCGcCGUCGUCGaCGGCucuUGGccGCUGCGc -3' miRNA: 3'- -GC-GCAGUAGCaGCCGu--ACC--UGAUGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 9309 | 0.67 | 0.716673 |
Target: 5'- gGCGUUgaguUCGUCGGCGacccGGGCgGCGa -3' miRNA: 3'- gCGCAGu---AGCAGCCGUa---CCUGaUGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 9396 | 0.69 | 0.607381 |
Target: 5'- uCGcCGUCGUCGaCGGCGcGuGGCaGCGGg -3' miRNA: 3'- -GC-GCAGUAGCaGCCGUaC-CUGaUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 11840 | 0.66 | 0.788837 |
Target: 5'- gGCGagGUCGacgccaCGGCGUGGGCauCGGc -3' miRNA: 3'- gCGCagUAGCa-----GCCGUACCUGauGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 12598 | 0.66 | 0.798583 |
Target: 5'- cCGCGaUCGUCGgcuacgcgcUCGGCcgGGcACggcuCGGg -3' miRNA: 3'- -GCGC-AGUAGC---------AGCCGuaCC-UGau--GCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 15326 | 0.73 | 0.383644 |
Target: 5'- --gGUCGgugCGUCGGCcgGGGCguaGCGGg -3' miRNA: 3'- gcgCAGUa--GCAGCCGuaCCUGa--UGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 17348 | 0.69 | 0.618378 |
Target: 5'- aCGuCGUCGagGUCGGC--GGACUGguCGGg -3' miRNA: 3'- -GC-GCAGUagCAGCCGuaCCUGAU--GCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 17479 | 0.67 | 0.748332 |
Target: 5'- gCGCcuGUCucggCGUCGGgAaGGAaCUGCGGg -3' miRNA: 3'- -GCG--CAGua--GCAGCCgUaCCU-GAUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 18155 | 0.66 | 0.817542 |
Target: 5'- gGCGUCGgguacagccUCGgcUCGGUGUGGGCgUACa- -3' miRNA: 3'- gCGCAGU---------AGC--AGCCGUACCUG-AUGcc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 18522 | 0.66 | 0.808155 |
Target: 5'- aCGCGg---CGUCGGCGUccgGGGCggucugauCGGg -3' miRNA: 3'- -GCGCaguaGCAGCCGUA---CCUGau------GCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 18758 | 0.69 | 0.629386 |
Target: 5'- aGCG-CAUgGccggCGGCGUGuACUGCGGa -3' miRNA: 3'- gCGCaGUAgCa---GCCGUACcUGAUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 19097 | 0.66 | 0.817542 |
Target: 5'- uCGcCGUCgguGUCGUCGGCccacgcGUGGGCgcCGa -3' miRNA: 3'- -GC-GCAG---UAGCAGCCG------UACCUGauGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 22276 | 0.67 | 0.737882 |
Target: 5'- aGCGgaUCGUCGaggCGGCcgGGGCgACGu -3' miRNA: 3'- gCGC--AGUAGCa--GCCGuaCCUGaUGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 22720 | 0.74 | 0.369536 |
Target: 5'- uGaCGUCAUCGUCGaGcCGUGGACgauccgcgaggacgACGGg -3' miRNA: 3'- gC-GCAGUAGCAGC-C-GUACCUGa-------------UGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 22916 | 1.1 | 0.00129 |
Target: 5'- gCGCGUCAUCGUCGGCAUGGACUACGGc -3' miRNA: 3'- -GCGCAGUAGCAGCCGUACCUGAUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 27105 | 0.67 | 0.758664 |
Target: 5'- cCGCgGUCGgcUCGugagcUCGGCcgGGACcguccgGCGGg -3' miRNA: 3'- -GCG-CAGU--AGC-----AGCCGuaCCUGa-----UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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