miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26375 5' -53.9 NC_005345.2 + 15326 0.73 0.383644
Target:  5'- --gGUCGgugCGUCGGCcgGGGCguaGCGGg -3'
miRNA:   3'- gcgCAGUa--GCAGCCGuaCCUGa--UGCC- -5'
26375 5' -53.9 NC_005345.2 + 22916 1.1 0.00129
Target:  5'- gCGCGUCAUCGUCGGCAUGGACUACGGc -3'
miRNA:   3'- -GCGCAGUAGCAGCCGUACCUGAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 36922 0.67 0.738932
Target:  5'- gCGgGUCAUCGccacggcucgggaggCGGCGgccGGACaGCGGc -3'
miRNA:   3'- -GCgCAGUAGCa--------------GCCGUa--CCUGaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 22276 0.67 0.737882
Target:  5'- aGCGgaUCGUCGaggCGGCcgGGGCgACGu -3'
miRNA:   3'- gCGC--AGUAGCa--GCCGuaCCUGaUGCc -5'
26375 5' -53.9 NC_005345.2 + 35905 0.69 0.6514
Target:  5'- gGCGgCAUCGUCGG-GUGG-CU-CGGg -3'
miRNA:   3'- gCGCaGUAGCAGCCgUACCuGAuGCC- -5'
26375 5' -53.9 NC_005345.2 + 18758 0.69 0.629386
Target:  5'- aGCG-CAUgGccggCGGCGUGuACUGCGGa -3'
miRNA:   3'- gCGCaGUAgCa---GCCGUACcUGAUGCC- -5'
26375 5' -53.9 NC_005345.2 + 38029 0.66 0.817542
Target:  5'- cCGCGUggaCGUCGacucugUGGCAUcGGAUcGCGGu -3'
miRNA:   3'- -GCGCA---GUAGCa-----GCCGUA-CCUGaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 18155 0.66 0.817542
Target:  5'- gGCGUCGgguacagccUCGgcUCGGUGUGGGCgUACa- -3'
miRNA:   3'- gCGCAGU---------AGC--AGCCGUACCUG-AUGcc -5'
26375 5' -53.9 NC_005345.2 + 3400 0.66 0.775925
Target:  5'- gCGCGgCAUCccccucgacgacguGUCGGUGUGGACgcUGCGc -3'
miRNA:   3'- -GCGCaGUAG--------------CAGCCGUACCUG--AUGCc -5'
26375 5' -53.9 NC_005345.2 + 45118 0.66 0.767852
Target:  5'- gGCGcCGUCGUCgcacaggGGCG-GGACaacGCGGa -3'
miRNA:   3'- gCGCaGUAGCAG-------CCGUaCCUGa--UGCC- -5'
26375 5' -53.9 NC_005345.2 + 9309 0.67 0.716673
Target:  5'- gGCGUUgaguUCGUCGGCGacccGGGCgGCGa -3'
miRNA:   3'- gCGCAGu---AGCAGCCGUa---CCUGaUGCc -5'
26375 5' -53.9 NC_005345.2 + 634 0.72 0.469294
Target:  5'- uCGCGUCcUCGgccugCGGCGUgagcgGGACcgUGCGGa -3'
miRNA:   3'- -GCGCAGuAGCa----GCCGUA-----CCUG--AUGCC- -5'
26375 5' -53.9 NC_005345.2 + 11840 0.66 0.788837
Target:  5'- gGCGagGUCGacgccaCGGCGUGGGCauCGGc -3'
miRNA:   3'- gCGCagUAGCa-----GCCGUACCUGauGCC- -5'
26375 5' -53.9 NC_005345.2 + 48420 0.71 0.499962
Target:  5'- aGCGgcaCGUCGaCGGCGUGGGCgaucUGGa -3'
miRNA:   3'- gCGCa--GUAGCaGCCGUACCUGau--GCC- -5'
26375 5' -53.9 NC_005345.2 + 34371 0.67 0.748332
Target:  5'- uCGCGauggaccCGUCGUCGGCGgucuccgcgcUGGGCaagguggGCGGc -3'
miRNA:   3'- -GCGCa------GUAGCAGCCGU----------ACCUGa------UGCC- -5'
26375 5' -53.9 NC_005345.2 + 12598 0.66 0.798583
Target:  5'- cCGCGaUCGUCGgcuacgcgcUCGGCcgGGcACggcuCGGg -3'
miRNA:   3'- -GCGC-AGUAGC---------AGCCGuaCC-UGau--GCC- -5'
26375 5' -53.9 NC_005345.2 + 8127 0.7 0.585462
Target:  5'- cCGcCGUCGUCGaCGGCucuUGGccGCUGCGc -3'
miRNA:   3'- -GC-GCAGUAGCaGCCGu--ACC--UGAUGCc -5'
26375 5' -53.9 NC_005345.2 + 22720 0.74 0.369536
Target:  5'- uGaCGUCAUCGUCGaGcCGUGGACgauccgcgaggacgACGGg -3'
miRNA:   3'- gC-GCAGUAGCAGC-C-GUACCUGa-------------UGCC- -5'
26375 5' -53.9 NC_005345.2 + 29439 0.71 0.531485
Target:  5'- gGCGUCGUCcUCGGCGUcGAg-GCGGu -3'
miRNA:   3'- gCGCAGUAGcAGCCGUAcCUgaUGCC- -5'
26375 5' -53.9 NC_005345.2 + 3308 0.7 0.563698
Target:  5'- gGCGUCGgcgagugcuUCGagggUGGCGUcacucGGGCUGCGGg -3'
miRNA:   3'- gCGCAGU---------AGCa---GCCGUA-----CCUGAUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.