Results 1 - 20 of 37 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26375 | 5' | -53.9 | NC_005345.2 | + | 22916 | 1.1 | 0.00129 |
Target: 5'- gCGCGUCAUCGUCGGCAUGGACUACGGc -3' miRNA: 3'- -GCGCAGUAGCAGCCGUACCUGAUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 22720 | 0.74 | 0.369536 |
Target: 5'- uGaCGUCAUCGUCGaGcCGUGGACgauccgcgaggacgACGGg -3' miRNA: 3'- gC-GCAGUAGCAGC-C-GUACCUGa-------------UGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 15326 | 0.73 | 0.383644 |
Target: 5'- --gGUCGgugCGUCGGCcgGGGCguaGCGGg -3' miRNA: 3'- gcgCAGUa--GCAGCCGuaCCUGa--UGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 29524 | 0.73 | 0.41104 |
Target: 5'- -aUGUCGUCGUCGGCGUcgaGGuACU-CGGg -3' miRNA: 3'- gcGCAGUAGCAGCCGUA---CC-UGAuGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 45347 | 0.72 | 0.449392 |
Target: 5'- -cCGUCGUCGcacCGGUGUGGACcgUGCGGc -3' miRNA: 3'- gcGCAGUAGCa--GCCGUACCUG--AUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 634 | 0.72 | 0.469294 |
Target: 5'- uCGCGUCcUCGgccugCGGCGUgagcgGGACcgUGCGGa -3' miRNA: 3'- -GCGCAGuAGCa----GCCGUA-----CCUG--AUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 43853 | 0.71 | 0.489637 |
Target: 5'- cCG-GUCGacggggCGUCGGCcgGGACUccGCGGc -3' miRNA: 3'- -GCgCAGUa-----GCAGCCGuaCCUGA--UGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 48420 | 0.71 | 0.499962 |
Target: 5'- aGCGgcaCGUCGaCGGCGUGGGCgaucUGGa -3' miRNA: 3'- gCGCa--GUAGCaGCCGUACCUGau--GCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 37677 | 0.71 | 0.510382 |
Target: 5'- gCGCGgcccugauGUCGUCGGcCGUGGGCcgccaguccUGCGGg -3' miRNA: 3'- -GCGCag------UAGCAGCC-GUACCUG---------AUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 29439 | 0.71 | 0.531485 |
Target: 5'- gGCGUCGUCcUCGGCGUcGAg-GCGGu -3' miRNA: 3'- gCGCAGUAGcAGCCGUAcCUgaUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 3308 | 0.7 | 0.563698 |
Target: 5'- gGCGUCGgcgagugcuUCGagggUGGCGUcacucGGGCUGCGGg -3' miRNA: 3'- gCGCAGU---------AGCa---GCCGUA-----CCUGAUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 8127 | 0.7 | 0.585462 |
Target: 5'- cCGcCGUCGUCGaCGGCucuUGGccGCUGCGc -3' miRNA: 3'- -GC-GCAGUAGCaGCCGu--ACC--UGAUGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 9396 | 0.69 | 0.607381 |
Target: 5'- uCGcCGUCGUCGaCGGCGcGuGGCaGCGGg -3' miRNA: 3'- -GC-GCAGUAGCaGCCGUaC-CUGaUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 17348 | 0.69 | 0.618378 |
Target: 5'- aCGuCGUCGagGUCGGC--GGACUGguCGGg -3' miRNA: 3'- -GC-GCAGUagCAGCCGuaCCUGAU--GCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 18758 | 0.69 | 0.629386 |
Target: 5'- aGCG-CAUgGccggCGGCGUGuACUGCGGa -3' miRNA: 3'- gCGCaGUAgCa---GCCGUACcUGAUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 35905 | 0.69 | 0.6514 |
Target: 5'- gGCGgCAUCGUCGG-GUGG-CU-CGGg -3' miRNA: 3'- gCGCaGUAGCAGCCgUACCuGAuGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 32972 | 0.69 | 0.655798 |
Target: 5'- cCGCGUCcgCGUaguccucggcgcaggCGGCcgGGGugGCGGg -3' miRNA: 3'- -GCGCAGuaGCA---------------GCCGuaCCUgaUGCC- -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 37270 | 0.68 | 0.662386 |
Target: 5'- uCGCGUCGUCGUCGag--GGGC-ACGu -3' miRNA: 3'- -GCGCAGUAGCAGCcguaCCUGaUGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 9309 | 0.67 | 0.716673 |
Target: 5'- gGCGUUgaguUCGUCGGCGacccGGGCgGCGa -3' miRNA: 3'- gCGCAGu---AGCAGCCGUa---CCUGaUGCc -5' |
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26375 | 5' | -53.9 | NC_005345.2 | + | 4212 | 0.67 | 0.727325 |
Target: 5'- cCGCGcC--UGUUGGCGUGGAagggggGCGGg -3' miRNA: 3'- -GCGCaGuaGCAGCCGUACCUga----UGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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