miRNA: 3'- gaGAgGGUCCGuuu----AUGGUC-UUCGGC- -5'
miRNA: 3'- gAGAGGGUCCGUU---UA--------------UGGUCUUCGGc -5'
miRNA: 3'- gaGAGGG----UC-CGUUUAUGGUCu----UCGGC- -5'
miRNA: 3'- -GAGAGGGUCCGUUUAUGGUCUUCGGC- -5'
Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2639 | 3' | -52.9 | NC_001491.2 | + | 86114 | 0.66 | 0.964613 |
|
Target: 5'- -gCUaCCAGGCcggcgauUACCAGcAGGCCGa -3' miRNA: 3'- gaGAgGGUCCGuuu----AUGGUC-UUCGGC- -5' |
|||||||
| 2639 | 3' | -52.9 | NC_001491.2 | + | 3899 | 0.66 | 0.963588 |
|
Target: 5'- gUCUCUCGGGUAGgccAUguccgcguaggcgcGCCGGAGGCUc -3' miRNA: 3'- gAGAGGGUCCGUU---UA--------------UGGUCUUCGGc -5' |
|||||||
| 2639 | 3' | -52.9 | NC_001491.2 | + | 71190 | 0.67 | 0.949205 |
|
Target: 5'- -cUUCCUgcguGGcGCGAAUACCGGucgguGGCCGg -3' miRNA: 3'- gaGAGGG----UC-CGUUUAUGGUCu----UCGGC- -5' |
|||||||
| 2639 | 3' | -52.9 | NC_001491.2 | + | 133309 | 1.1 | 0.004234 |
|
Target: 5'- cCUCUCCCAGGCAAAUACCAGAAGCCGg -3' miRNA: 3'- -GAGAGGGUCCGUUUAUGGUCUUCGGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home