miRNA display CGI


Results 21 - 40 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26394 3' -55 NC_005345.2 + 8387 0.67 0.631772
Target:  5'- -gGCCGACCG-GCccgacgaGCCGCUGCc- -3'
miRNA:   3'- caCGGCUGGCuCGaag----UGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 8823 0.77 0.172206
Target:  5'- -cGCCGGCCGGGCUcgUCugCcgcgGCUGCGGc -3'
miRNA:   3'- caCGGCUGGCUCGA--AGugG----UGAUGCU- -5'
26394 3' -55 NC_005345.2 + 9316 0.67 0.620637
Target:  5'- -gGCCGGCCGAGCc-CGCgAUgcCGAg -3'
miRNA:   3'- caCGGCUGGCUCGaaGUGgUGauGCU- -5'
26394 3' -55 NC_005345.2 + 9364 0.77 0.167528
Target:  5'- -gGgCGGCCGGGCUcgACCACUACGGg -3'
miRNA:   3'- caCgGCUGGCUCGAagUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 10406 0.68 0.554368
Target:  5'- -aGCCGGgCGAGggUCGCCACccCGGa -3'
miRNA:   3'- caCGGCUgGCUCgaAGUGGUGauGCU- -5'
26394 3' -55 NC_005345.2 + 10821 0.66 0.66403
Target:  5'- gGUGCCugcggcaGACaCGAGCcggCGCCgaGCUGCGGu -3'
miRNA:   3'- -CACGG-------CUG-GCUCGaa-GUGG--UGAUGCU- -5'
26394 3' -55 NC_005345.2 + 11420 0.66 0.676213
Target:  5'- -cGCCGACCagccGGCgccgCGCCGCagcGCGAu -3'
miRNA:   3'- caCGGCUGGc---UCGaa--GUGGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 11711 0.66 0.687243
Target:  5'- -gGCCGACC-AGCgggcCGCCGCcGCGu -3'
miRNA:   3'- caCGGCUGGcUCGaa--GUGGUGaUGCu -5'
26394 3' -55 NC_005345.2 + 13006 0.69 0.490337
Target:  5'- cUGCCGGCCGcacgguGGCggugugC-CCACUGCGGc -3'
miRNA:   3'- cACGGCUGGC------UCGaa----GuGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 13188 0.66 0.69822
Target:  5'- aUGaCCGGcCCGAGCggCAgcCCGCgcgGCGAg -3'
miRNA:   3'- cAC-GGCU-GGCUCGaaGU--GGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 13223 0.67 0.642908
Target:  5'- -cGCCGACCuu-CUUCGCCGCgucccCGAg -3'
miRNA:   3'- caCGGCUGGcucGAAGUGGUGau---GCU- -5'
26394 3' -55 NC_005345.2 + 13261 0.66 0.709131
Target:  5'- aUGCCG-CCGucGGCga-ACCGCUGCa- -3'
miRNA:   3'- cACGGCuGGC--UCGaagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 13523 0.69 0.507104
Target:  5'- cGUGCCGGaugaugaaauucaCGGGCUUCGCCGacaccuugACGAc -3'
miRNA:   3'- -CACGGCUg------------GCUCGAAGUGGUga------UGCU- -5'
26394 3' -55 NC_005345.2 + 14763 0.7 0.449612
Target:  5'- cGUGCuCGACCGGGC-UCGuCgACUGCa- -3'
miRNA:   3'- -CACG-GCUGGCUCGaAGU-GgUGAUGcu -5'
26394 3' -55 NC_005345.2 + 14927 0.66 0.665139
Target:  5'- cGUGCCGccCCGGGCga-ACUGCUGCc- -3'
miRNA:   3'- -CACGGCu-GGCUCGaagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 15686 0.69 0.490337
Target:  5'- -gGCCGGCCGAuCU--GCCGCUGCa- -3'
miRNA:   3'- caCGGCUGGCUcGAagUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 15829 0.69 0.532695
Target:  5'- -gGCCGAcggcCCGAGCUaCACCGCgcaGGu -3'
miRNA:   3'- caCGGCU----GGCUCGAaGUGGUGaugCU- -5'
26394 3' -55 NC_005345.2 + 16086 0.67 0.642908
Target:  5'- cUGCCGcacguacacGCCGAGCUcgCGCCAUgugagcaGCGGc -3'
miRNA:   3'- cACGGC---------UGGCUCGAa-GUGGUGa------UGCU- -5'
26394 3' -55 NC_005345.2 + 16344 0.68 0.554368
Target:  5'- aGUGCCucgcggaacgcGCCGAGCaUCGCCGCgGCGu -3'
miRNA:   3'- -CACGGc----------UGGCUCGaAGUGGUGaUGCu -5'
26394 3' -55 NC_005345.2 + 17253 0.65 0.719965
Target:  5'- -cGuCCGACCGGGCggcaggCGCCGCg---- -3'
miRNA:   3'- caC-GGCUGGCUCGaa----GUGGUGaugcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.