miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26394 3' -55 NC_005345.2 + 792 0.67 0.654034
Target:  5'- aUGCCGACCGGGCc-CGCUuacacCUGCu- -3'
miRNA:   3'- cACGGCUGGCUCGaaGUGGu----GAUGcu -5'
26394 3' -55 NC_005345.2 + 1334 0.67 0.642908
Target:  5'- uUGCCGGCCGGGUcgcgguaacgCGCCuGCcACGAg -3'
miRNA:   3'- cACGGCUGGCUCGaa--------GUGG-UGaUGCU- -5'
26394 3' -55 NC_005345.2 + 2149 0.7 0.449612
Target:  5'- -cGCCGugcaGCCGGGCgauacUCACCugucCUGCGAc -3'
miRNA:   3'- caCGGC----UGGCUCGa----AGUGGu---GAUGCU- -5'
26394 3' -55 NC_005345.2 + 2481 0.67 0.631772
Target:  5'- -cGCgCGAgCGAGCUcgauguacaCGCCGCUGCGc -3'
miRNA:   3'- caCG-GCUgGCUCGAa--------GUGGUGAUGCu -5'
26394 3' -55 NC_005345.2 + 4219 0.76 0.20279
Target:  5'- aUGCUGcgguacGCCGAGCcgauggUCGCCGCUGCGGa -3'
miRNA:   3'- cACGGC------UGGCUCGa-----AGUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 4414 0.66 0.676213
Target:  5'- -aGUCaGugCGAGCUgUGCCACgggGCGAg -3'
miRNA:   3'- caCGG-CugGCUCGAaGUGGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 4781 0.67 0.654034
Target:  5'- cGUGCCuuuCCGGGC-UCGCCGCgggugGgGAa -3'
miRNA:   3'- -CACGGcu-GGCUCGaAGUGGUGa----UgCU- -5'
26394 3' -55 NC_005345.2 + 5147 0.66 0.665139
Target:  5'- -cGCCGACaccgugcaCGAGCgacucgUCGCCGCccuCGAa -3'
miRNA:   3'- caCGGCUG--------GCUCGa-----AGUGGUGau-GCU- -5'
26394 3' -55 NC_005345.2 + 5413 0.68 0.554368
Target:  5'- -gGUCGGCCGAGCgucUCGCCGaguucuucgGCGGc -3'
miRNA:   3'- caCGGCUGGCUCGa--AGUGGUga-------UGCU- -5'
26394 3' -55 NC_005345.2 + 5497 0.69 0.511334
Target:  5'- -gGUCGcaACCGAGCggggUCGCUACUACc- -3'
miRNA:   3'- caCGGC--UGGCUCGa---AGUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 5602 0.66 0.709131
Target:  5'- cGUGCCGuggggcGCCGGGCUcgUgGCCGacGCGGu -3'
miRNA:   3'- -CACGGC------UGGCUCGA--AgUGGUgaUGCU- -5'
26394 3' -55 NC_005345.2 + 5641 0.66 0.709131
Target:  5'- -cGCCGAcCCGAuCggCACCGCccgGCGGg -3'
miRNA:   3'- caCGGCU-GGCUcGaaGUGGUGa--UGCU- -5'
26394 3' -55 NC_005345.2 + 5666 0.66 0.665139
Target:  5'- -cGgCGAUCGAGg-UCACCugUGCGu -3'
miRNA:   3'- caCgGCUGGCUCgaAGUGGugAUGCu -5'
26394 3' -55 NC_005345.2 + 5679 0.69 0.500787
Target:  5'- -aGCCGACCGcGCUgCGCCGCg---- -3'
miRNA:   3'- caCGGCUGGCuCGAaGUGGUGaugcu -5'
26394 3' -55 NC_005345.2 + 6085 0.65 0.719965
Target:  5'- cUGCCcgacgacacGACCGAGCcggCACCGCgagugcaccgUACGGc -3'
miRNA:   3'- cACGG---------CUGGCUCGaa-GUGGUG----------AUGCU- -5'
26394 3' -55 NC_005345.2 + 6200 0.67 0.628431
Target:  5'- cGUGCCGcCCGgcccguccgcgaGGCUcuugcuccggcuggUCGCCGgUACGAa -3'
miRNA:   3'- -CACGGCuGGC------------UCGA--------------AGUGGUgAUGCU- -5'
26394 3' -55 NC_005345.2 + 6472 0.69 0.521972
Target:  5'- -gGCCG-CCGAGCUgUACgGCgGCGAg -3'
miRNA:   3'- caCGGCuGGCUCGAaGUGgUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 6988 0.71 0.395898
Target:  5'- cUGCUGGCCGGGCgccgacaggcagcgUCGCCACcgugagUGCGGu -3'
miRNA:   3'- cACGGCUGGCUCGa-------------AGUGGUG------AUGCU- -5'
26394 3' -55 NC_005345.2 + 7259 0.66 0.665139
Target:  5'- -gGCCGaACCGAcaaGCgUCGCCGCccgcGCGAu -3'
miRNA:   3'- caCGGC-UGGCU---CGaAGUGGUGa---UGCU- -5'
26394 3' -55 NC_005345.2 + 7714 0.68 0.576293
Target:  5'- aGUGCCGccgguaCGAGCU--GCCGCUGCu- -3'
miRNA:   3'- -CACGGCug----GCUCGAagUGGUGAUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.