miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26394 3' -55 NC_005345.2 + 31017 1.09 0.000863
Target:  5'- cGUGCCGACCGAGCUUCACCACUACGAg -3'
miRNA:   3'- -CACGGCUGGCUCGAAGUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 9364 0.77 0.167528
Target:  5'- -gGgCGGCCGGGCUcgACCACUACGGg -3'
miRNA:   3'- caCgGCUGGCUCGAagUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 8823 0.77 0.172206
Target:  5'- -cGCCGGCCGGGCUcgUCugCcgcgGCUGCGGc -3'
miRNA:   3'- caCGGCUGGCUCGA--AGugG----UGAUGCU- -5'
26394 3' -55 NC_005345.2 + 38542 0.76 0.20279
Target:  5'- -gGCCGACCG-GCcgCGCCGCUGCu- -3'
miRNA:   3'- caCGGCUGGCuCGaaGUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 4219 0.76 0.20279
Target:  5'- aUGCUGcgguacGCCGAGCcgauggUCGCCGCUGCGGa -3'
miRNA:   3'- cACGGC------UGGCUCGa-----AGUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 17520 0.76 0.208324
Target:  5'- -cGCCGGCCGGGCgaggaccgugUCGCCA-UGCGAu -3'
miRNA:   3'- caCGGCUGGCUCGa---------AGUGGUgAUGCU- -5'
26394 3' -55 NC_005345.2 + 36615 0.75 0.225713
Target:  5'- aUGgCGGCCGGGCUcgUGCCGCUGCGc -3'
miRNA:   3'- cACgGCUGGCUCGAa-GUGGUGAUGCu -5'
26394 3' -55 NC_005345.2 + 29747 0.75 0.231778
Target:  5'- -aGCCGACCGAGCUcggCGCgaCGCUGCu- -3'
miRNA:   3'- caCGGCUGGCUCGAa--GUG--GUGAUGcu -5'
26394 3' -55 NC_005345.2 + 24770 0.74 0.285331
Target:  5'- cUGCCG-CCGAGCUUgGCCGCguUGAa -3'
miRNA:   3'- cACGGCuGGCUCGAAgUGGUGauGCU- -5'
26394 3' -55 NC_005345.2 + 43514 0.72 0.331589
Target:  5'- gGUGCCGAUCGGGUcggcgaUCACCGCgucggccACGAg -3'
miRNA:   3'- -CACGGCUGGCUCGa-----AGUGGUGa------UGCU- -5'
26394 3' -55 NC_005345.2 + 46596 0.72 0.339814
Target:  5'- -cGUCGACCGGGCacucgccgUCGCCACcGCGu -3'
miRNA:   3'- caCGGCUGGCUCGa-------AGUGGUGaUGCu -5'
26394 3' -55 NC_005345.2 + 26461 0.71 0.38313
Target:  5'- -cGCCG-CCccGCUUCACCGCcACGAc -3'
miRNA:   3'- caCGGCuGGcuCGAAGUGGUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 36750 0.71 0.392222
Target:  5'- -gGCCGACuCGcGCcUCGCCGCUGCc- -3'
miRNA:   3'- caCGGCUG-GCuCGaAGUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 6988 0.71 0.395898
Target:  5'- cUGCUGGCCGGGCgccgacaggcagcgUCGCCACcgugagUGCGGu -3'
miRNA:   3'- cACGGCUGGCUCGa-------------AGUGGUG------AUGCU- -5'
26394 3' -55 NC_005345.2 + 45212 0.7 0.42996
Target:  5'- cUGCCGGCCGcGGCgagCACCucgACGAc -3'
miRNA:   3'- cACGGCUGGC-UCGaa-GUGGugaUGCU- -5'
26394 3' -55 NC_005345.2 + 24640 0.7 0.439724
Target:  5'- cGUGCgGGCCGGGUUggUCGCCGau-CGAg -3'
miRNA:   3'- -CACGgCUGGCUCGA--AGUGGUgauGCU- -5'
26394 3' -55 NC_005345.2 + 14763 0.7 0.449612
Target:  5'- cGUGCuCGACCGGGC-UCGuCgACUGCa- -3'
miRNA:   3'- -CACG-GCUGGCUCGaAGU-GgUGAUGcu -5'
26394 3' -55 NC_005345.2 + 2149 0.7 0.449612
Target:  5'- -cGCCGugcaGCCGGGCgauacUCACCugucCUGCGAc -3'
miRNA:   3'- caCGGC----UGGCUCGa----AGUGGu---GAUGCU- -5'
26394 3' -55 NC_005345.2 + 34424 0.7 0.476905
Target:  5'- cGUGCCGGCCucggugugcagcacGAGC-UCGCCGCcACa- -3'
miRNA:   3'- -CACGGCUGG--------------CUCGaAGUGGUGaUGcu -5'
26394 3' -55 NC_005345.2 + 15686 0.69 0.490337
Target:  5'- -gGCCGGCCGAuCU--GCCGCUGCa- -3'
miRNA:   3'- caCGGCUGGCUcGAagUGGUGAUGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.