miRNA display CGI


Results 1 - 20 of 85 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26394 3' -55 NC_005345.2 + 31017 1.09 0.000863
Target:  5'- cGUGCCGACCGAGCUUCACCACUACGAg -3'
miRNA:   3'- -CACGGCUGGCUCGAAGUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 5413 0.68 0.554368
Target:  5'- -gGUCGGCCGAGCgucUCGCCGaguucuucgGCGGc -3'
miRNA:   3'- caCGGCUGGCUCGa--AGUGGUga-------UGCU- -5'
26394 3' -55 NC_005345.2 + 19981 0.68 0.565303
Target:  5'- aUGCCGACCcGGU-UCGCCGaggGCGAc -3'
miRNA:   3'- cACGGCUGGcUCGaAGUGGUga-UGCU- -5'
26394 3' -55 NC_005345.2 + 6085 0.65 0.719965
Target:  5'- cUGCCcgacgacacGACCGAGCcggCACCGCgagugcaccgUACGGc -3'
miRNA:   3'- cACGG---------CUGGCUCGaa-GUGGUG----------AUGCU- -5'
26394 3' -55 NC_005345.2 + 36615 0.75 0.225713
Target:  5'- aUGgCGGCCGGGCUcgUGCCGCUGCGc -3'
miRNA:   3'- cACgGCUGGCUCGAa-GUGGUGAUGCu -5'
26394 3' -55 NC_005345.2 + 29747 0.75 0.231778
Target:  5'- -aGCCGACCGAGCUcggCGCgaCGCUGCu- -3'
miRNA:   3'- caCGGCUGGCUCGAa--GUG--GUGAUGcu -5'
26394 3' -55 NC_005345.2 + 45212 0.7 0.42996
Target:  5'- cUGCCGGCCGcGGCgagCACCucgACGAc -3'
miRNA:   3'- cACGGCUGGC-UCGaa-GUGGugaUGCU- -5'
26394 3' -55 NC_005345.2 + 24640 0.7 0.439724
Target:  5'- cGUGCgGGCCGGGUUggUCGCCGau-CGAg -3'
miRNA:   3'- -CACGgCUGGCUCGA--AGUGGUgauGCU- -5'
26394 3' -55 NC_005345.2 + 23571 0.69 0.490337
Target:  5'- -gGCCGcguCCGAGCU--GCgGCUGCGGg -3'
miRNA:   3'- caCGGCu--GGCUCGAagUGgUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 15829 0.69 0.532695
Target:  5'- -gGCCGAcggcCCGAGCUaCACCGCgcaGGu -3'
miRNA:   3'- caCGGCU----GGCUCGAaGUGGUGaugCU- -5'
26394 3' -55 NC_005345.2 + 5497 0.69 0.511334
Target:  5'- -gGUCGcaACCGAGCggggUCGCUACUACc- -3'
miRNA:   3'- caCGGC--UGGCUCGa---AGUGGUGAUGcu -5'
26394 3' -55 NC_005345.2 + 13006 0.69 0.490337
Target:  5'- cUGCCGGCCGcacgguGGCggugugC-CCACUGCGGc -3'
miRNA:   3'- cACGGCUGGC------UCGaa----GuGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 9364 0.77 0.167528
Target:  5'- -gGgCGGCCGGGCUcgACCACUACGGg -3'
miRNA:   3'- caCgGCUGGCUCGAagUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 6472 0.69 0.521972
Target:  5'- -gGCCG-CCGAGCUgUACgGCgGCGAg -3'
miRNA:   3'- caCGGCuGGCUCGAaGUGgUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 8823 0.77 0.172206
Target:  5'- -cGCCGGCCGGGCUcgUCugCcgcgGCUGCGGc -3'
miRNA:   3'- caCGGCUGGCUCGA--AGugG----UGAUGCU- -5'
26394 3' -55 NC_005345.2 + 14763 0.7 0.449612
Target:  5'- cGUGCuCGACCGGGC-UCGuCgACUGCa- -3'
miRNA:   3'- -CACG-GCUGGCUCGaAGU-GgUGAUGcu -5'
26394 3' -55 NC_005345.2 + 38500 0.69 0.521972
Target:  5'- -cGCCGAcCCGGGCg--ACCAUgGCGAg -3'
miRNA:   3'- caCGGCU-GGCUCGaagUGGUGaUGCU- -5'
26394 3' -55 NC_005345.2 + 23940 0.68 0.565303
Target:  5'- gGUGaCCGGCCGGGggugaUUCACCGCggGCu- -3'
miRNA:   3'- -CAC-GGCUGGCUCg----AAGUGGUGa-UGcu -5'
26394 3' -55 NC_005345.2 + 4219 0.76 0.20279
Target:  5'- aUGCUGcgguacGCCGAGCcgauggUCGCCGCUGCGGa -3'
miRNA:   3'- cACGGC------UGGCUCGa-----AGUGGUGAUGCU- -5'
26394 3' -55 NC_005345.2 + 46596 0.72 0.339814
Target:  5'- -cGUCGACCGGGCacucgccgUCGCCACcGCGu -3'
miRNA:   3'- caCGGCUGGCUCGa-------AGUGGUGaUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.