Results 1 - 20 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26404 | 3' | -54.8 | NC_005345.2 | + | 36124 | 0.66 | 0.753535 |
Target: 5'- uCCgGUCGCCgcaGUGggCACAccGCCAcCGu -3' miRNA: 3'- -GGaCAGCGGg--CACaaGUGU--CGGUaGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 41509 | 0.66 | 0.753535 |
Target: 5'- cUCUGccgcaCGCCuCGaUGUUCugGGCCggGUCGg -3' miRNA: 3'- -GGACa----GCGG-GC-ACAAGugUCGG--UAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 813 | 0.66 | 0.74312 |
Target: 5'- aCCUGcUCGCCCGggGgccgUCACA-CCG-CGg -3' miRNA: 3'- -GGAC-AGCGGGCa-Ca---AGUGUcGGUaGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 43899 | 0.66 | 0.74312 |
Target: 5'- gCUGcaUCGCCaCGcgGcgCGCAGCgCGUCGg -3' miRNA: 3'- gGAC--AGCGG-GCa-CaaGUGUCG-GUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 12721 | 0.66 | 0.74312 |
Target: 5'- -----aGCCCGUGUUC---GCCGUCGa -3' miRNA: 3'- ggacagCGGGCACAAGuguCGGUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 32691 | 0.66 | 0.742072 |
Target: 5'- aCCUGacccCGUUCGUGUUCcagcacaGCAGCCGcCGc -3' miRNA: 3'- -GGACa---GCGGGCACAAG-------UGUCGGUaGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 14711 | 0.66 | 0.721965 |
Target: 5'- --cGUCG-CCGUGUUgUGCAGCgCGUCGc -3' miRNA: 3'- ggaCAGCgGGCACAA-GUGUCG-GUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 28157 | 0.66 | 0.721965 |
Target: 5'- --cGUCGCCCGgucggcGUUCcucgccGCGGCCAagGg -3' miRNA: 3'- ggaCAGCGGGCa-----CAAG------UGUCGGUagC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 32452 | 0.66 | 0.711246 |
Target: 5'- gCCUGUCGgCCGUGaugUCgGCgAGCCGg-- -3' miRNA: 3'- -GGACAGCgGGCACa--AG-UG-UCGGUagc -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 16696 | 0.66 | 0.711246 |
Target: 5'- gCCUgcggGUCGUCCGUGaugUCgagguagaGCGuGCCGUCGg -3' miRNA: 3'- -GGA----CAGCGGGCACa--AG--------UGU-CGGUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 35087 | 0.66 | 0.711246 |
Target: 5'- uCUUGuUCGCgaucgUCGUGgUCGCGGUCGUCGu -3' miRNA: 3'- -GGAC-AGCG-----GGCACaAGUGUCGGUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 17645 | 0.67 | 0.689587 |
Target: 5'- gCCgGUCGgucacgaCCGUGUUCGCggGGCCGcCGa -3' miRNA: 3'- -GGaCAGCg------GGCACAAGUG--UCGGUaGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 44973 | 0.67 | 0.689587 |
Target: 5'- gCCUGcCGcCCCGUGagCGCcuGCCgcGUCGa -3' miRNA: 3'- -GGACaGC-GGGCACaaGUGu-CGG--UAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 23564 | 0.67 | 0.683042 |
Target: 5'- aCCUGUCGgCCGcguccgagcugcggcUGcgggUCGCGGCguUCGg -3' miRNA: 3'- -GGACAGCgGGC---------------ACa---AGUGUCGguAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 14905 | 0.67 | 0.667705 |
Target: 5'- --gGUCGaggaCCGcGUUCGCGGCCGUg- -3' miRNA: 3'- ggaCAGCg---GGCaCAAGUGUCGGUAgc -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 18779 | 0.67 | 0.645689 |
Target: 5'- aCCUG-CGCCCGccgcggGCuGCCGUCGg -3' miRNA: 3'- -GGACaGCGGGCacaag-UGuCGGUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 20198 | 0.68 | 0.639071 |
Target: 5'- cCUUGUCGUgCGUGUccccauagacccgcCGCAGCgCAUCGc -3' miRNA: 3'- -GGACAGCGgGCACAa-------------GUGUCG-GUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 41593 | 0.68 | 0.634658 |
Target: 5'- cUCgGUCGUgaugCCGUG--CACGGCCGUCGc -3' miRNA: 3'- -GGaCAGCG----GGCACaaGUGUCGGUAGC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 7351 | 0.68 | 0.579656 |
Target: 5'- -gUGUgGCCCGcgGUggCGCAGCCGggCGg -3' miRNA: 3'- ggACAgCGGGCa-CAa-GUGUCGGUa-GC- -5' |
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26404 | 3' | -54.8 | NC_005345.2 | + | 40575 | 0.69 | 0.557899 |
Target: 5'- aCUGUgaCGCCCGcaUGgacgaUCGCAGCCggCGa -3' miRNA: 3'- gGACA--GCGGGC--ACa----AGUGUCGGuaGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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