miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2641 5' -56.6 NC_001491.2 + 127382 1.09 0.002239
Target:  5'- aAUCUAACUACCGCACACGGCGCGGGCu -3'
miRNA:   3'- -UAGAUUGAUGGCGUGUGCCGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 5500 0.78 0.254855
Target:  5'- uUCUGGCUGCCGUACAgcaGGUcgggcgcgGCGGGCu -3'
miRNA:   3'- uAGAUUGAUGGCGUGUg--CCG--------CGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 26979 0.75 0.410325
Target:  5'- gAUCcacgAGgUACCGCccCACGGCGCGGcGCa -3'
miRNA:   3'- -UAGa---UUgAUGGCGu-GUGCCGCGCC-CG- -5'
2641 5' -56.6 NC_001491.2 + 100943 0.73 0.492756
Target:  5'- --gUGGCgACUGCACAUGGCG-GGGCc -3'
miRNA:   3'- uagAUUGaUGGCGUGUGCCGCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 1945 0.72 0.521909
Target:  5'- --gUGGCgcucccgggGCCaGCGCACGGCGCaGGCg -3'
miRNA:   3'- uagAUUGa--------UGG-CGUGUGCCGCGcCCG- -5'
2641 5' -56.6 NC_001491.2 + 120256 0.72 0.541711
Target:  5'- uUUUGACUuuGCCGCuCugGGuCGCGcGGCg -3'
miRNA:   3'- uAGAUUGA--UGGCGuGugCC-GCGC-CCG- -5'
2641 5' -56.6 NC_001491.2 + 115950 0.71 0.592177
Target:  5'- cUCUAACU-UCGUACGCGGUccgcgGCGuGGCg -3'
miRNA:   3'- uAGAUUGAuGGCGUGUGCCG-----CGC-CCG- -5'
2641 5' -56.6 NC_001491.2 + 3823 0.7 0.643362
Target:  5'- -gCUGGCUgGCCGCGgcaGCGGCGgccUGGGCc -3'
miRNA:   3'- uaGAUUGA-UGGCGUg--UGCCGC---GCCCG- -5'
2641 5' -56.6 NC_001491.2 + 104979 0.7 0.681148
Target:  5'- ---gGGCcGCCGCAgauuuggccggggcCGCGGCGgGGGCc -3'
miRNA:   3'- uagaUUGaUGGCGU--------------GUGCCGCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 105045 0.7 0.681148
Target:  5'- ---gGGCcGCCGCAgauuuggccggggcCGCGGCGgGGGCc -3'
miRNA:   3'- uagaUUGaUGGCGU--------------GUGCCGCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 67563 0.7 0.684193
Target:  5'- ----cGCU-CCGCGCugGGCcUGGGCg -3'
miRNA:   3'- uagauUGAuGGCGUGugCCGcGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 73391 0.69 0.694315
Target:  5'- uUCUGGCaGCCuGCGaGCGGUGCaGGGUa -3'
miRNA:   3'- uAGAUUGaUGG-CGUgUGCCGCG-CCCG- -5'
2641 5' -56.6 NC_001491.2 + 35655 0.69 0.724331
Target:  5'- cUCgc-CUGCgGCcgGCGCGGCGCugGGGCc -3'
miRNA:   3'- uAGauuGAUGgCG--UGUGCCGCG--CCCG- -5'
2641 5' -56.6 NC_001491.2 + 85479 0.69 0.724331
Target:  5'- uAUCUGgauuuccgcgGCUggggaaACCGCGgccuCGGCGUGGGCa -3'
miRNA:   3'- -UAGAU----------UGA------UGGCGUgu--GCCGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 136725 0.69 0.724331
Target:  5'- gGUCcAGCUGCCGCAUACccauCGgGGGUa -3'
miRNA:   3'- -UAGaUUGAUGGCGUGUGcc--GCgCCCG- -5'
2641 5' -56.6 NC_001491.2 + 21875 0.68 0.750739
Target:  5'- uGUCgaugGGCUcgggaaagcaccccACgGCACGCgGGUGUGGGCu -3'
miRNA:   3'- -UAGa---UUGA--------------UGgCGUGUG-CCGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 33513 0.68 0.75363
Target:  5'- ---aGGCUGCCGCGgcCGCGGcCGCuccggggaccaGGGCg -3'
miRNA:   3'- uagaUUGAUGGCGU--GUGCC-GCG-----------CCCG- -5'
2641 5' -56.6 NC_001491.2 + 52859 0.68 0.772641
Target:  5'- ----cACaGCCGCggucuGCGCGGCGCuGGCa -3'
miRNA:   3'- uagauUGaUGGCG-----UGUGCCGCGcCCG- -5'
2641 5' -56.6 NC_001491.2 + 8893 0.68 0.781962
Target:  5'- uUCccGCUGCgCGC-CACGcUGCGGGCa -3'
miRNA:   3'- uAGauUGAUG-GCGuGUGCcGCGCCCG- -5'
2641 5' -56.6 NC_001491.2 + 10051 0.68 0.781962
Target:  5'- gGUCUcGCUGCCGCGCuCcGUGgGGGa -3'
miRNA:   3'- -UAGAuUGAUGGCGUGuGcCGCgCCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.