Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2641 | 5' | -56.6 | NC_001491.2 | + | 1945 | 0.72 | 0.521909 |
Target: 5'- --gUGGCgcucccgggGCCaGCGCACGGCGCaGGCg -3' miRNA: 3'- uagAUUGa--------UGG-CGUGUGCCGCGcCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 2983 | 0.67 | 0.816944 |
Target: 5'- uUCUGcggcuggGCUGCUGCcCcCGGgaGCGGGCg -3' miRNA: 3'- uAGAU-------UGAUGGCGuGuGCCg-CGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 3823 | 0.7 | 0.643362 |
Target: 5'- -gCUGGCUgGCCGCGgcaGCGGCGgccUGGGCc -3' miRNA: 3'- uaGAUUGA-UGGCGUg--UGCCGC---GCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 5500 | 0.78 | 0.254855 |
Target: 5'- uUCUGGCUGCCGUACAgcaGGUcgggcgcgGCGGGCu -3' miRNA: 3'- uAGAUUGAUGGCGUGUg--CCG--------CGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 8893 | 0.68 | 0.781962 |
Target: 5'- uUCccGCUGCgCGC-CACGcUGCGGGCa -3' miRNA: 3'- uAGauUGAUG-GCGuGUGCcGCGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 10051 | 0.68 | 0.781962 |
Target: 5'- gGUCUcGCUGCCGCGCuCcGUGgGGGa -3' miRNA: 3'- -UAGAuUGAUGGCGUGuGcCGCgCCCg -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 11460 | 0.68 | 0.791148 |
Target: 5'- uUCUgcaGAC-ACgUGCGCGCGGCuGCGGGg -3' miRNA: 3'- uAGA---UUGaUG-GCGUGUGCCG-CGCCCg -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 21875 | 0.68 | 0.750739 |
Target: 5'- uGUCgaugGGCUcgggaaagcaccccACgGCACGCgGGUGUGGGCu -3' miRNA: 3'- -UAGa---UUGA--------------UGgCGUGUG-CCGCGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 26935 | 0.67 | 0.826369 |
Target: 5'- ----uGCgGCCGCugAcuCGGCGUGGGUc -3' miRNA: 3'- uagauUGaUGGCGugU--GCCGCGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 26979 | 0.75 | 0.410325 |
Target: 5'- gAUCcacgAGgUACCGCccCACGGCGCGGcGCa -3' miRNA: 3'- -UAGa---UUgAUGGCGu-GUGCCGCGCC-CG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 27137 | 0.66 | 0.866362 |
Target: 5'- -gCUGcCU-CCGCcgACACGGCGCGcacgaccgcGGCa -3' miRNA: 3'- uaGAUuGAuGGCG--UGUGCCGCGC---------CCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 33513 | 0.68 | 0.75363 |
Target: 5'- ---aGGCUGCCGCGgcCGCGGcCGCuccggggaccaGGGCg -3' miRNA: 3'- uagaUUGAUGGCGU--GUGCC-GCG-----------CCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 35655 | 0.69 | 0.724331 |
Target: 5'- cUCgc-CUGCgGCcgGCGCGGCGCugGGGCc -3' miRNA: 3'- uAGauuGAUGgCG--UGUGCCGCG--CCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 52859 | 0.68 | 0.772641 |
Target: 5'- ----cACaGCCGCggucuGCGCGGCGCuGGCa -3' miRNA: 3'- uagauUGaUGGCG-----UGUGCCGCGcCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 53869 | 0.66 | 0.850163 |
Target: 5'- uUCggGACUcuccaggGCCGCugGaGGCGCaGGCa -3' miRNA: 3'- uAGa-UUGA-------UGGCGugUgCCGCGcCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 65090 | 0.67 | 0.842949 |
Target: 5'- uUCUAugUgcgauGCCGCAguaACGGCGCucuGGGa -3' miRNA: 3'- uAGAUugA-----UGGCGUg--UGCCGCG---CCCg -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 67563 | 0.7 | 0.684193 |
Target: 5'- ----cGCU-CCGCGCugGGCcUGGGCg -3' miRNA: 3'- uagauUGAuGGCGUGugCCGcGCCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 72537 | 0.66 | 0.850955 |
Target: 5'- -gCUAACUgGCCuaGCGCuaAUGGCGCgugGGGCu -3' miRNA: 3'- uaGAUUGA-UGG--CGUG--UGCCGCG---CCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 73391 | 0.69 | 0.694315 |
Target: 5'- uUCUGGCaGCCuGCGaGCGGUGCaGGGUa -3' miRNA: 3'- uAGAUUGaUGG-CGUgUGCCGCG-CCCG- -5' |
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2641 | 5' | -56.6 | NC_001491.2 | + | 83286 | 0.68 | 0.781962 |
Target: 5'- -aUUAACUGCCcccagcuggguGCGguuuuagcCACGGCuGCGGGCc -3' miRNA: 3'- uaGAUUGAUGG-----------CGU--------GUGCCG-CGCCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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