miRNA display CGI


Results 1 - 18 of 18 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26410 5' -53.2 NC_005345.2 + 29085 0.66 0.836438
Target:  5'- cCCGGGGUgG------GCUUCGAGGGCu -3'
miRNA:   3'- -GGCCCCAgCaguggaUGAAGCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 16471 0.66 0.836438
Target:  5'- aCGGGGUCagGUCgACCUcgGCcUCGAcGGCg -3'
miRNA:   3'- gGCCCCAG--CAG-UGGA--UGaAGCUcUUG- -5'
26410 5' -53.2 NC_005345.2 + 3716 0.66 0.82739
Target:  5'- gCCGGGGgg--UGCCUGCgacgUCGAcGACg -3'
miRNA:   3'- -GGCCCCagcaGUGGAUGa---AGCUcUUG- -5'
26410 5' -53.2 NC_005345.2 + 3483 0.66 0.818134
Target:  5'- uCCGGgugcacugcccGGUCGUCGCagg---CGAGGACg -3'
miRNA:   3'- -GGCC-----------CCAGCAGUGgaugaaGCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 38935 0.67 0.769079
Target:  5'- aCGGGGUCGUgcuUGCCgauCUUCGgcauGGGAUc -3'
miRNA:   3'- gGCCCCAGCA---GUGGau-GAAGC----UCUUG- -5'
26410 5' -53.2 NC_005345.2 + 3302 0.67 0.758792
Target:  5'- gUCGaGGG-CGUCGgCgagUGCUUCGAGggUg -3'
miRNA:   3'- -GGC-CCCaGCAGUgG---AUGAAGCUCuuG- -5'
26410 5' -53.2 NC_005345.2 + 18553 0.67 0.758792
Target:  5'- cUCGGGG-CGcUCGCCgggUGCgcgcccagcgUCGGGAACa -3'
miRNA:   3'- -GGCCCCaGC-AGUGG---AUGa---------AGCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 44148 0.67 0.748373
Target:  5'- gCGGGcUCGUCACC-AUggCGAGcGCg -3'
miRNA:   3'- gGCCCcAGCAGUGGaUGaaGCUCuUG- -5'
26410 5' -53.2 NC_005345.2 + 1450 0.68 0.705612
Target:  5'- aCGGGGUCGUCguACCggaUGCcgUCGgccgugaugcGGAGCg -3'
miRNA:   3'- gGCCCCAGCAG--UGG---AUGa-AGC----------UCUUG- -5'
26410 5' -53.2 NC_005345.2 + 40065 0.68 0.705612
Target:  5'- gCGGGGacCGUCACCgucgACcgCGGGcAGCa -3'
miRNA:   3'- gGCCCCa-GCAGUGGa---UGaaGCUC-UUG- -5'
26410 5' -53.2 NC_005345.2 + 43962 0.68 0.683746
Target:  5'- gCCGGGG-CGg-ACCUcgggcgagcCUUCGAGGGCg -3'
miRNA:   3'- -GGCCCCaGCagUGGAu--------GAAGCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 18239 0.69 0.650598
Target:  5'- gCCGGcGGUCGUCACCggg-UUGcAGAucaGCa -3'
miRNA:   3'- -GGCC-CCAGCAGUGGaugaAGC-UCU---UG- -5'
26410 5' -53.2 NC_005345.2 + 27994 0.7 0.573111
Target:  5'- gCGGGG-CGUCGCgUaggGCgUCGAGGAUg -3'
miRNA:   3'- gGCCCCaGCAGUGgA---UGaAGCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 31247 0.71 0.540459
Target:  5'- uCCGGGGUCGggugcgCACUcgggUGCgcgggugCGGGGGCg -3'
miRNA:   3'- -GGCCCCAGCa-----GUGG----AUGaa-----GCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 35439 0.71 0.52971
Target:  5'- gUCGGGGUCccaugugaacUCGCCgcaUUCGAGGGCg -3'
miRNA:   3'- -GGCCCCAGc---------AGUGGaugAAGCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 44356 0.72 0.477281
Target:  5'- gCCGGGGggcgaUCGUCACCUcgaacgggucGCcggCGAGggUg -3'
miRNA:   3'- -GGCCCC-----AGCAGUGGA----------UGaa-GCUCuuG- -5'
26410 5' -53.2 NC_005345.2 + 3974 0.75 0.326589
Target:  5'- cCCGGGuUCGUCACCcucgcguguccccGCUcgUCGAGAGCa -3'
miRNA:   3'- -GGCCCcAGCAGUGGa------------UGA--AGCUCUUG- -5'
26410 5' -53.2 NC_005345.2 + 38133 1.12 0.000984
Target:  5'- gCCGGGGUCGUCACCUACUUCGAGAACg -3'
miRNA:   3'- -GGCCCCAGCAGUGGAUGAAGCUCUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.