miRNA display CGI


Results 21 - 40 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26413 5' -57.1 NC_005345.2 + 30369 0.7 0.364469
Target:  5'- gACGGCagcccgcgGCGGGCGCaGGUCGAGG-CGu -3'
miRNA:   3'- aUGCUG--------CGCUCGCG-CCAGCUCUaGCc -5'
26413 5' -57.1 NC_005345.2 + 40172 0.77 0.137777
Target:  5'- gUACGGCGCGcAGCuGCGGaUCGAGGcCGGc -3'
miRNA:   3'- -AUGCUGCGC-UCG-CGCC-AGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 13645 0.66 0.611574
Target:  5'- cGCGGCGUGAGCGCcGaCGAGcagCGc -3'
miRNA:   3'- aUGCUGCGCUCGCGcCaGCUCua-GCc -5'
26413 5' -57.1 NC_005345.2 + 30140 0.68 0.505733
Target:  5'- gGCGACGuCGAgGCGCcgccccgcucgGGcCGAGGcUCGGg -3'
miRNA:   3'- aUGCUGC-GCU-CGCG-----------CCaGCUCU-AGCC- -5'
26413 5' -57.1 NC_005345.2 + 27005 0.77 0.133698
Target:  5'- cGgGACGCGGaCGCGGUCGAguuccucGAUCGGg -3'
miRNA:   3'- aUgCUGCGCUcGCGCCAGCU-------CUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 23584 0.66 0.611574
Target:  5'- cUGCGGCuGCGGGuCGCGG-CGu--UCGGc -3'
miRNA:   3'- -AUGCUG-CGCUC-GCGCCaGCucuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 27610 0.79 0.104583
Target:  5'- cACG-CGCGAGCaCGG-CGAGAUCGGu -3'
miRNA:   3'- aUGCuGCGCUCGcGCCaGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 38956 1.08 0.000862
Target:  5'- gUACGACGCGAGCGCGGUCGAGAUCGGc -3'
miRNA:   3'- -AUGCUGCGCUCGCGCCAGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 31311 0.67 0.557945
Target:  5'- --gGGCGCugcuGCGCGGUCugGAGggCGGc -3'
miRNA:   3'- augCUGCGcu--CGCGCCAG--CUCuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 29251 0.66 0.626712
Target:  5'- cGCGAUGCGcagcggcucgcccgcAacaucggcGCGCGGuUCGAGGUCGc -3'
miRNA:   3'- aUGCUGCGC---------------U--------CGCGCC-AGCUCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 22298 0.72 0.308537
Target:  5'- gGCGACGUGGGUcgaggugucGCGGUCcGGuUCGGg -3'
miRNA:   3'- aUGCUGCGCUCG---------CGCCAGcUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 26771 0.74 0.205824
Target:  5'- -cCGGCGCGGGUGCGG-CG-GAUCGu -3'
miRNA:   3'- auGCUGCGCUCGCGCCaGCuCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 24176 0.66 0.590012
Target:  5'- aAUGGCGCGGG-GCGGuUCGcuGUCGa -3'
miRNA:   3'- aUGCUGCGCUCgCGCC-AGCucUAGCc -5'
26413 5' -57.1 NC_005345.2 + 30955 0.66 0.615897
Target:  5'- cGCGAC-CGGgugcauuggaacggcGCGCGGuUCGAGGugaUCGGc -3'
miRNA:   3'- aUGCUGcGCU---------------CGCGCC-AGCUCU---AGCC- -5'
26413 5' -57.1 NC_005345.2 + 40616 0.66 0.60078
Target:  5'- aGCGGCGUGccCGaaCGGUCGAGG-CGGc -3'
miRNA:   3'- aUGCUGCGCucGC--GCCAGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 31870 0.66 0.611574
Target:  5'- aACGugGgcacggguuCGGGUGCGGU-GAGuUCGGg -3'
miRNA:   3'- aUGCugC---------GCUCGCGCCAgCUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 31183 0.67 0.536841
Target:  5'- gUGCGuACuCGGGCGCGG-CGGGugcggCGGg -3'
miRNA:   3'- -AUGC-UGcGCUCGCGCCaGCUCua---GCC- -5'
26413 5' -57.1 NC_005345.2 + 9171 0.66 0.622385
Target:  5'- gUAgGACucgGCGAGCGUGG-CGAGGaaUCGc -3'
miRNA:   3'- -AUgCUG---CGCUCGCGCCaGCUCU--AGCc -5'
26413 5' -57.1 NC_005345.2 + 30738 0.67 0.547361
Target:  5'- cACGGcCGUGAGCGCGaGgccggCGAGGgugaGGg -3'
miRNA:   3'- aUGCU-GCGCUCGCGC-Ca----GCUCUag--CC- -5'
26413 5' -57.1 NC_005345.2 + 31258 0.67 0.536841
Target:  5'- gUGCGcacuCGgGuGCGCGGgugCGGGggCGGg -3'
miRNA:   3'- -AUGCu---GCgCuCGCGCCa--GCUCuaGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.