Results 21 - 40 of 97 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26413 | 5' | -57.1 | NC_005345.2 | + | 30369 | 0.7 | 0.364469 |
Target: 5'- gACGGCagcccgcgGCGGGCGCaGGUCGAGG-CGu -3' miRNA: 3'- aUGCUG--------CGCUCGCG-CCAGCUCUaGCc -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 40172 | 0.77 | 0.137777 |
Target: 5'- gUACGGCGCGcAGCuGCGGaUCGAGGcCGGc -3' miRNA: 3'- -AUGCUGCGC-UCG-CGCC-AGCUCUaGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 13645 | 0.66 | 0.611574 |
Target: 5'- cGCGGCGUGAGCGCcGaCGAGcagCGc -3' miRNA: 3'- aUGCUGCGCUCGCGcCaGCUCua-GCc -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 30140 | 0.68 | 0.505733 |
Target: 5'- gGCGACGuCGAgGCGCcgccccgcucgGGcCGAGGcUCGGg -3' miRNA: 3'- aUGCUGC-GCU-CGCG-----------CCaGCUCU-AGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 27005 | 0.77 | 0.133698 |
Target: 5'- cGgGACGCGGaCGCGGUCGAguuccucGAUCGGg -3' miRNA: 3'- aUgCUGCGCUcGCGCCAGCU-------CUAGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 23584 | 0.66 | 0.611574 |
Target: 5'- cUGCGGCuGCGGGuCGCGG-CGu--UCGGc -3' miRNA: 3'- -AUGCUG-CGCUC-GCGCCaGCucuAGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 27610 | 0.79 | 0.104583 |
Target: 5'- cACG-CGCGAGCaCGG-CGAGAUCGGu -3' miRNA: 3'- aUGCuGCGCUCGcGCCaGCUCUAGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 38956 | 1.08 | 0.000862 |
Target: 5'- gUACGACGCGAGCGCGGUCGAGAUCGGc -3' miRNA: 3'- -AUGCUGCGCUCGCGCCAGCUCUAGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 31311 | 0.67 | 0.557945 |
Target: 5'- --gGGCGCugcuGCGCGGUCugGAGggCGGc -3' miRNA: 3'- augCUGCGcu--CGCGCCAG--CUCuaGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 29251 | 0.66 | 0.626712 |
Target: 5'- cGCGAUGCGcagcggcucgcccgcAacaucggcGCGCGGuUCGAGGUCGc -3' miRNA: 3'- aUGCUGCGC---------------U--------CGCGCC-AGCUCUAGCc -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 22298 | 0.72 | 0.308537 |
Target: 5'- gGCGACGUGGGUcgaggugucGCGGUCcGGuUCGGg -3' miRNA: 3'- aUGCUGCGCUCG---------CGCCAGcUCuAGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 26771 | 0.74 | 0.205824 |
Target: 5'- -cCGGCGCGGGUGCGG-CG-GAUCGu -3' miRNA: 3'- auGCUGCGCUCGCGCCaGCuCUAGCc -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 24176 | 0.66 | 0.590012 |
Target: 5'- aAUGGCGCGGG-GCGGuUCGcuGUCGa -3' miRNA: 3'- aUGCUGCGCUCgCGCC-AGCucUAGCc -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 30955 | 0.66 | 0.615897 |
Target: 5'- cGCGAC-CGGgugcauuggaacggcGCGCGGuUCGAGGugaUCGGc -3' miRNA: 3'- aUGCUGcGCU---------------CGCGCC-AGCUCU---AGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 40616 | 0.66 | 0.60078 |
Target: 5'- aGCGGCGUGccCGaaCGGUCGAGG-CGGc -3' miRNA: 3'- aUGCUGCGCucGC--GCCAGCUCUaGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 31870 | 0.66 | 0.611574 |
Target: 5'- aACGugGgcacggguuCGGGUGCGGU-GAGuUCGGg -3' miRNA: 3'- aUGCugC---------GCUCGCGCCAgCUCuAGCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 31183 | 0.67 | 0.536841 |
Target: 5'- gUGCGuACuCGGGCGCGG-CGGGugcggCGGg -3' miRNA: 3'- -AUGC-UGcGCUCGCGCCaGCUCua---GCC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 9171 | 0.66 | 0.622385 |
Target: 5'- gUAgGACucgGCGAGCGUGG-CGAGGaaUCGc -3' miRNA: 3'- -AUgCUG---CGCUCGCGCCaGCUCU--AGCc -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 30738 | 0.67 | 0.547361 |
Target: 5'- cACGGcCGUGAGCGCGaGgccggCGAGGgugaGGg -3' miRNA: 3'- aUGCU-GCGCUCGCGC-Ca----GCUCUag--CC- -5' |
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26413 | 5' | -57.1 | NC_005345.2 | + | 31258 | 0.67 | 0.536841 |
Target: 5'- gUGCGcacuCGgGuGCGCGGgugCGGGggCGGg -3' miRNA: 3'- -AUGCu---GCgCuCGCGCCa--GCUCuaGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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