miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26413 5' -57.1 NC_005345.2 + 38956 1.08 0.000862
Target:  5'- gUACGACGCGAGCGCGGUCGAGAUCGGc -3'
miRNA:   3'- -AUGCUGCGCUCGCGCCAGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 30140 0.68 0.505733
Target:  5'- gGCGACGuCGAgGCGCcgccccgcucgGGcCGAGGcUCGGg -3'
miRNA:   3'- aUGCUGC-GCU-CGCG-----------CCaGCUCU-AGCC- -5'
26413 5' -57.1 NC_005345.2 + 10291 0.67 0.557945
Target:  5'- --aGAUGCG-GCGCGGgcugUGGGAgCGGc -3'
miRNA:   3'- augCUGCGCuCGCGCCa---GCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 38881 0.66 0.644023
Target:  5'- -cCGGcCGCGAGUGgaCGG-CaGAGAUCGGc -3'
miRNA:   3'- auGCU-GCGCUCGC--GCCaG-CUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 26771 0.74 0.205824
Target:  5'- -cCGGCGCGGGUGCGG-CG-GAUCGu -3'
miRNA:   3'- auGCUGCGCUCGCGCCaGCuCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 33382 0.74 0.22253
Target:  5'- gGCGGCacaugGCuacAGcCGCGGUCGAGGUCGGc -3'
miRNA:   3'- aUGCUG-----CGc--UC-GCGCCAGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 22298 0.72 0.308537
Target:  5'- gGCGACGUGGGUcgaggugucGCGGUCcGGuUCGGg -3'
miRNA:   3'- aUGCUGCGCUCG---------CGCCAGcUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 10612 0.71 0.339667
Target:  5'- aGCGGCGCG-GC-CGGUCGgcccGGGUCGa -3'
miRNA:   3'- aUGCUGCGCuCGcGCCAGC----UCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 9158 0.7 0.380813
Target:  5'- gACGGCGCGGGUGCacgggccGGUCGugugcgagcuGAUCGa -3'
miRNA:   3'- aUGCUGCGCUCGCG-------CCAGCu---------CUAGCc -5'
26413 5' -57.1 NC_005345.2 + 35946 0.68 0.505733
Target:  5'- gGCGGCGUcgucauGAGCGgGGUUGAcuuccuGUCGGa -3'
miRNA:   3'- aUGCUGCG------CUCGCgCCAGCUc-----UAGCC- -5'
26413 5' -57.1 NC_005345.2 + 48228 0.7 0.390497
Target:  5'- gACGACGUGAcGC-CGGUCGAucugCGGg -3'
miRNA:   3'- aUGCUGCGCU-CGcGCCAGCUcua-GCC- -5'
26413 5' -57.1 NC_005345.2 + 30369 0.7 0.364469
Target:  5'- gACGGCagcccgcgGCGGGCGCaGGUCGAGG-CGu -3'
miRNA:   3'- aUGCUG--------CGCUCGCG-CCAGCUCUaGCc -5'
26413 5' -57.1 NC_005345.2 + 27610 0.79 0.104583
Target:  5'- cACG-CGCGAGCaCGG-CGAGAUCGGu -3'
miRNA:   3'- aUGCuGCGCUCGcGCCaGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 28335 0.69 0.455727
Target:  5'- gACGACGaCGAGCGCGacacgCGccGUCGGc -3'
miRNA:   3'- aUGCUGC-GCUCGCGCca---GCucUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 27005 0.77 0.133698
Target:  5'- cGgGACGCGGaCGCGGUCGAguuccucGAUCGGg -3'
miRNA:   3'- aUgCUGCGCUcGCGCCAGCU-------CUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 23112 0.71 0.356064
Target:  5'- -cCGAgGCGAGCgagGCGG-CGAG-UCGGg -3'
miRNA:   3'- auGCUgCGCUCG---CGCCaGCUCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 14817 0.69 0.465521
Target:  5'- gGCgGGCGCGGGUGUGGUCGAcgcccGAgcagcuugcCGGg -3'
miRNA:   3'- aUG-CUGCGCUCGCGCCAGCU-----CUa--------GCC- -5'
26413 5' -57.1 NC_005345.2 + 31311 0.67 0.557945
Target:  5'- --gGGCGCugcuGCGCGGUCugGAGggCGGc -3'
miRNA:   3'- augCUGCGcu--CGCGCCAG--CUCuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 40172 0.77 0.137777
Target:  5'- gUACGGCGCGcAGCuGCGGaUCGAGGcCGGc -3'
miRNA:   3'- -AUGCUGCGC-UCG-CGCC-AGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 38582 0.72 0.301103
Target:  5'- gUACGugGCGcuCGCGGcCGGGAuuaccUCGGc -3'
miRNA:   3'- -AUGCugCGCucGCGCCaGCUCU-----AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.