miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26413 5' -57.1 NC_005345.2 + 38956 1.08 0.000862
Target:  5'- gUACGACGCGAGCGCGGUCGAGAUCGGc -3'
miRNA:   3'- -AUGCUGCGCUCGCGCCAGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 26921 0.79 0.101712
Target:  5'- -uCGACGuCGAGCGCauGGUCGAGGUCaGGc -3'
miRNA:   3'- auGCUGC-GCUCGCG--CCAGCUCUAG-CC- -5'
26413 5' -57.1 NC_005345.2 + 27610 0.79 0.104583
Target:  5'- cACG-CGCGAGCaCGG-CGAGAUCGGu -3'
miRNA:   3'- aUGCuGCGCUCGcGCCaGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 43474 0.78 0.110556
Target:  5'- cGCGGCGC-AGCGCGGUCG-GcUCGGu -3'
miRNA:   3'- aUGCUGCGcUCGCGCCAGCuCuAGCC- -5'
26413 5' -57.1 NC_005345.2 + 45538 0.78 0.126914
Target:  5'- cACuGCGCGAGCagggcgacaGCGGcCGAGGUCGGg -3'
miRNA:   3'- aUGcUGCGCUCG---------CGCCaGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 27005 0.77 0.133698
Target:  5'- cGgGACGCGGaCGCGGUCGAguuccucGAUCGGg -3'
miRNA:   3'- aUgCUGCGCUcGCGCCAGCU-------CUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 40172 0.77 0.137777
Target:  5'- gUACGGCGCGcAGCuGCGGaUCGAGGcCGGc -3'
miRNA:   3'- -AUGCUGCGC-UCG-CGCC-AGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 27909 0.76 0.159501
Target:  5'- gGCGACGCGuucggugucgcuuccGaGCGCGGugccUCGAGGUCGGc -3'
miRNA:   3'- aUGCUGCGC---------------U-CGCGCC----AGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 8446 0.76 0.162097
Target:  5'- gACGACGagcaCGGGCGCGGUCGcGAcucccguuUCGGg -3'
miRNA:   3'- aUGCUGC----GCUCGCGCCAGCuCU--------AGCC- -5'
26413 5' -57.1 NC_005345.2 + 34488 0.75 0.197366
Target:  5'- gGCGACGCcgcccggccggugccGAGgaCGCGGUCGAGG-CGGg -3'
miRNA:   3'- aUGCUGCG---------------CUC--GCGCCAGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 37727 0.75 0.199977
Target:  5'- cUGCGGCGCGgcgccggcuggucGGCGUcGUCGAGGUCGa -3'
miRNA:   3'- -AUGCUGCGC-------------UCGCGcCAGCUCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 26771 0.74 0.205824
Target:  5'- -cCGGCGCGGGUGCGG-CG-GAUCGu -3'
miRNA:   3'- auGCUGCGCUCGCGCCaGCuCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 33382 0.74 0.22253
Target:  5'- gGCGGCacaugGCuacAGcCGCGGUCGAGGUCGGc -3'
miRNA:   3'- aUGCUG-----CGc--UC-GCGCCAGCUCUAGCC- -5'
26413 5' -57.1 NC_005345.2 + 2553 0.73 0.246583
Target:  5'- gGCGACgGCGAGUGCccGGUCGAcGugcUCGGg -3'
miRNA:   3'- aUGCUG-CGCUCGCG--CCAGCU-Cu--AGCC- -5'
26413 5' -57.1 NC_005345.2 + 45845 0.73 0.272752
Target:  5'- gGCGGCGCGGGCGaCGaUCGuGGgggCGGg -3'
miRNA:   3'- aUGCUGCGCUCGC-GCcAGCuCUa--GCC- -5'
26413 5' -57.1 NC_005345.2 + 43911 0.72 0.279633
Target:  5'- cGCGGCGCGcAGCGCG-UCGGcGAUCaGGc -3'
miRNA:   3'- aUGCUGCGC-UCGCGCcAGCU-CUAG-CC- -5'
26413 5' -57.1 NC_005345.2 + 40184 0.72 0.279633
Target:  5'- -uCGACGUGAGCGacaGGUCGAGccCGa -3'
miRNA:   3'- auGCUGCGCUCGCg--CCAGCUCuaGCc -5'
26413 5' -57.1 NC_005345.2 + 32646 0.72 0.286652
Target:  5'- aGCcACGCGAGCaGCaGGUCGAGcgCGa -3'
miRNA:   3'- aUGcUGCGCUCG-CG-CCAGCUCuaGCc -5'
26413 5' -57.1 NC_005345.2 + 18338 0.72 0.301103
Target:  5'- cGCGACGUcGGCcCgGGUCGAGGUCGa -3'
miRNA:   3'- aUGCUGCGcUCGcG-CCAGCUCUAGCc -5'
26413 5' -57.1 NC_005345.2 + 38582 0.72 0.301103
Target:  5'- gUACGugGCGcuCGCGGcCGGGAuuaccUCGGc -3'
miRNA:   3'- -AUGCugCGCucGCGCCaGCUCU-----AGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.