miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26413 5' -57.1 NC_005345.2 + 863 0.66 0.622385
Target:  5'- gACGaucaGCGCGcacugcGCGCGGUCGGG--CGGc -3'
miRNA:   3'- aUGC----UGCGCu-----CGCGCCAGCUCuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 2360 0.66 0.60078
Target:  5'- gGCGGCGC-AGCcCGGUCGcGAccucgCGGg -3'
miRNA:   3'- aUGCUGCGcUCGcGCCAGCuCUa----GCC- -5'
26413 5' -57.1 NC_005345.2 + 2553 0.73 0.246583
Target:  5'- gGCGACgGCGAGUGCccGGUCGAcGugcUCGGg -3'
miRNA:   3'- aUGCUG-CGCUCGCG--CCAGCU-Cu--AGCC- -5'
26413 5' -57.1 NC_005345.2 + 2679 0.67 0.579278
Target:  5'- gGCGAggcCGCGGGCGuuGUCGAuGUgGGu -3'
miRNA:   3'- aUGCU---GCGCUCGCgcCAGCUcUAgCC- -5'
26413 5' -57.1 NC_005345.2 + 2682 0.66 0.60078
Target:  5'- -uCGAUGCG-GCGgGGcgCGGGAUCa- -3'
miRNA:   3'- auGCUGCGCuCGCgCCa-GCUCUAGcc -5'
26413 5' -57.1 NC_005345.2 + 3420 0.67 0.579278
Target:  5'- --aGGCgGCGGGCGCGG-CGGcGggCGGc -3'
miRNA:   3'- augCUG-CGCUCGCGCCaGCU-CuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 3728 0.69 0.446046
Target:  5'- cUGCGACGuCGAcGaCGCGGUCGaAGAacUCGc -3'
miRNA:   3'- -AUGCUGC-GCU-C-GCGCCAGC-UCU--AGCc -5'
26413 5' -57.1 NC_005345.2 + 3875 0.67 0.579278
Target:  5'- --gGACGcCGAgugccugcaGCGCGG-CGAGggCGGg -3'
miRNA:   3'- augCUGC-GCU---------CGCGCCaGCUCuaGCC- -5'
26413 5' -57.1 NC_005345.2 + 5268 0.66 0.60078
Target:  5'- gGCGGCaggGCGGGCucgGgGGUCGGGuacugCGGg -3'
miRNA:   3'- aUGCUG---CGCUCG---CgCCAGCUCua---GCC- -5'
26413 5' -57.1 NC_005345.2 + 5429 0.68 0.475423
Target:  5'- gGCGACGaCG-GCGUucguaucgaGGUCGAGGcCGGc -3'
miRNA:   3'- aUGCUGC-GCuCGCG---------CCAGCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 5684 0.67 0.547361
Target:  5'- gUGCGuCgGUGAGCGCGGUCGucuuGAguccgUCGa -3'
miRNA:   3'- -AUGCuG-CGCUCGCGCCAGCu---CU-----AGCc -5'
26413 5' -57.1 NC_005345.2 + 6530 0.66 0.590012
Target:  5'- cACGGgGCGGG-GCGGggCGGGG-CGGu -3'
miRNA:   3'- aUGCUgCGCUCgCGCCa-GCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 6868 0.68 0.495533
Target:  5'- cACGACGC--GC-CGGUCGAGGUggaCGGc -3'
miRNA:   3'- aUGCUGCGcuCGcGCCAGCUCUA---GCC- -5'
26413 5' -57.1 NC_005345.2 + 8416 0.66 0.633204
Target:  5'- -uCGACG-GGGCGCGGcuggacgcCGAGcgGUCGGu -3'
miRNA:   3'- auGCUGCgCUCGCGCCa-------GCUC--UAGCC- -5'
26413 5' -57.1 NC_005345.2 + 8446 0.76 0.162097
Target:  5'- gACGACGagcaCGGGCGCGGUCGcGAcucccguuUCGGg -3'
miRNA:   3'- aUGCUGC----GCUCGCGCCAGCuCU--------AGCC- -5'
26413 5' -57.1 NC_005345.2 + 9158 0.7 0.380813
Target:  5'- gACGGCGCGGGUGCacgggccGGUCGugugcgagcuGAUCGa -3'
miRNA:   3'- aUGCUGCGCUCGCG-------CCAGCu---------CUAGCc -5'
26413 5' -57.1 NC_005345.2 + 9171 0.66 0.622385
Target:  5'- gUAgGACucgGCGAGCGUGG-CGAGGaaUCGc -3'
miRNA:   3'- -AUgCUG---CGCUCGCGCCaGCUCU--AGCc -5'
26413 5' -57.1 NC_005345.2 + 9329 0.69 0.465521
Target:  5'- cGCGAUGcCGAGgGUGGUCGGcauguccacgguGAUCaGGg -3'
miRNA:   3'- aUGCUGC-GCUCgCGCCAGCU------------CUAG-CC- -5'
26413 5' -57.1 NC_005345.2 + 10291 0.67 0.557945
Target:  5'- --aGAUGCG-GCGCGGgcugUGGGAgCGGc -3'
miRNA:   3'- augCUGCGCuCGCGCCa---GCUCUaGCC- -5'
26413 5' -57.1 NC_005345.2 + 10397 0.7 0.399439
Target:  5'- cACGGCGUGAGC-CGGgCGAGgGUCGc -3'
miRNA:   3'- aUGCUGCGCUCGcGCCaGCUC-UAGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.