miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26414 5' -53.5 NC_005345.2 + 19493 0.66 0.758922
Target:  5'- -aCaCGCCGUcGACGGCGaCCUucGCGUCGu -3'
miRNA:   3'- caGcGUGGUA-CUGCUGC-GGA--UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 19714 0.7 0.54964
Target:  5'- cUCGaCGCCGagGACGACGCCcGCAaCGc -3'
miRNA:   3'- cAGC-GUGGUa-CUGCUGCGGaUGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 21047 0.69 0.605006
Target:  5'- -gCGCGCC--GGCGAcCGCCU-CGUCGa -3'
miRNA:   3'- caGCGUGGuaCUGCU-GCGGAuGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 22144 0.67 0.737784
Target:  5'- gGUCGCGCUAccGCGACGCUgugGCGa-- -3'
miRNA:   3'- -CAGCGUGGUacUGCUGCGGa--UGUagc -5'
26414 5' -53.5 NC_005345.2 + 22239 0.73 0.369425
Target:  5'- cGUCGUACCGgucGGCGAgcgcCGCCUGCAgCGc -3'
miRNA:   3'- -CAGCGUGGUa--CUGCU----GCGGAUGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 24361 0.69 0.587169
Target:  5'- -cUGCACCAccuugccgaggucgGACGACGCCcGCAcuUCGg -3'
miRNA:   3'- caGCGUGGUa-------------CUGCUGCGGaUGU--AGC- -5'
26414 5' -53.5 NC_005345.2 + 26047 0.67 0.748414
Target:  5'- cUCGCucGCCucGGCGAgCGCCUGC-UCGa -3'
miRNA:   3'- cAGCG--UGGuaCUGCU-GCGGAUGuAGC- -5'
26414 5' -53.5 NC_005345.2 + 26785 0.67 0.70528
Target:  5'- -gCGgAUCGUGGcCGGCGCC-GCGUCGc -3'
miRNA:   3'- caGCgUGGUACU-GCUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 27122 0.68 0.638586
Target:  5'- --gGCGCCAcGGCGGCaccgGCCgGCGUCGa -3'
miRNA:   3'- cagCGUGGUaCUGCUG----CGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 27390 0.69 0.587169
Target:  5'- -gCGCGCUGUGcACGAuCGCCUcgacgcagcgguaccGCGUCGa -3'
miRNA:   3'- caGCGUGGUAC-UGCU-GCGGA---------------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 28353 0.67 0.716205
Target:  5'- -aCGCGCCGU--CGGCGCCgACAgggCGg -3'
miRNA:   3'- caGCGUGGUAcuGCUGCGGaUGUa--GC- -5'
26414 5' -53.5 NC_005345.2 + 29005 0.66 0.758922
Target:  5'- cUCGCGCgGUGGCucccgaacgucGACGUCgacgACAUCa -3'
miRNA:   3'- cAGCGUGgUACUG-----------CUGCGGa---UGUAGc -5'
26414 5' -53.5 NC_005345.2 + 30418 0.71 0.495937
Target:  5'- -cCGCGCuCAUGGCG-CGCC-ACAUCc -3'
miRNA:   3'- caGCGUG-GUACUGCuGCGGaUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 30437 0.73 0.396632
Target:  5'- uUCGCcauGCgAUGACGACGCCgACcgCGa -3'
miRNA:   3'- cAGCG---UGgUACUGCUGCGGaUGuaGC- -5'
26414 5' -53.5 NC_005345.2 + 30542 0.69 0.627385
Target:  5'- -gCGUGCCgGUGACGGCGCCgaccGCuuUCGa -3'
miRNA:   3'- caGCGUGG-UACUGCUGCGGa---UGu-AGC- -5'
26414 5' -53.5 NC_005345.2 + 31245 0.68 0.638586
Target:  5'- aGUCGaACCGUGugcGCGGCGCCgugAUCGg -3'
miRNA:   3'- -CAGCgUGGUAC---UGCUGCGGaugUAGC- -5'
26414 5' -53.5 NC_005345.2 + 32786 0.67 0.727043
Target:  5'- cGUCGCgAUCAccGCGGCGCCgGCcgCGa -3'
miRNA:   3'- -CAGCG-UGGUacUGCUGCGGaUGuaGC- -5'
26414 5' -53.5 NC_005345.2 + 37721 0.68 0.672109
Target:  5'- aUCGCGCUgcGgcGCGGCGCCggcuggucgGCGUCGu -3'
miRNA:   3'- cAGCGUGGuaC--UGCUGCGGa--------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 38590 0.71 0.506501
Target:  5'- gGUCgGCAUCGUGGCGAgCGCCUcggACA-CGg -3'
miRNA:   3'- -CAG-CGUGGUACUGCU-GCGGA---UGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 39051 0.69 0.579394
Target:  5'- cGUCGCgcaugugccgcucgGCCcggAUGACGAgCGCCUcgacgGCGUCGa -3'
miRNA:   3'- -CAGCG--------------UGG---UACUGCU-GCGGA-----UGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.