miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26414 5' -53.5 NC_005345.2 + 51 0.67 0.727043
Target:  5'- uGUCGUACCcgGAUgccacauaGAUGCC-ACAUCc -3'
miRNA:   3'- -CAGCGUGGuaCUG--------CUGCGGaUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 595 0.67 0.748414
Target:  5'- -cCGCAUCc--GCGACGCCcGCAUCc -3'
miRNA:   3'- caGCGUGGuacUGCUGCGGaUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 3934 0.7 0.571642
Target:  5'- -cCGCACCcccGUGACcgGGCGUCUguACGUCGa -3'
miRNA:   3'- caGCGUGG---UACUG--CUGCGGA--UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 4061 0.68 0.660959
Target:  5'- aGUCGU-UCAUGGaaauCGCCUGCGUCGa -3'
miRNA:   3'- -CAGCGuGGUACUgcu-GCGGAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 5600 0.67 0.716205
Target:  5'- cUCGUGCCGUGG-GGCGCCggGC-UCGu -3'
miRNA:   3'- cAGCGUGGUACUgCUGCGGa-UGuAGC- -5'
26414 5' -53.5 NC_005345.2 + 6705 0.67 0.716205
Target:  5'- aUCGcCGCgCGUGGgGACGCCgaugACgAUCGg -3'
miRNA:   3'- cAGC-GUG-GUACUgCUGCGGa---UG-UAGC- -5'
26414 5' -53.5 NC_005345.2 + 8309 0.72 0.454744
Target:  5'- --gGCGCCAUGGCGGCGCgCaGCAgcagCGu -3'
miRNA:   3'- cagCGUGGUACUGCUGCG-GaUGUa---GC- -5'
26414 5' -53.5 NC_005345.2 + 10044 0.67 0.727043
Target:  5'- uGUCGagacggagaACC--GACGACGCCgACGUCGc -3'
miRNA:   3'- -CAGCg--------UGGuaCUGCUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 10183 0.71 0.517159
Target:  5'- gGUCGCGCCGaucucGACcGCGCUcGCGUCGu -3'
miRNA:   3'- -CAGCGUGGUa----CUGcUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 10336 0.69 0.582724
Target:  5'- uGUCGuCGCCGUcGACGACGUgaCgguCAUCGa -3'
miRNA:   3'- -CAGC-GUGGUA-CUGCUGCG--Gau-GUAGC- -5'
26414 5' -53.5 NC_005345.2 + 11830 0.66 0.788593
Target:  5'- -cCGgACCGUGGgcgagguCGACGCCacggcguggGCAUCGg -3'
miRNA:   3'- caGCgUGGUACU-------GCUGCGGa--------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 13234 0.67 0.716205
Target:  5'- uUCGCcgcguccccgaGCCAcccGACGAUGCCgcCGUCGg -3'
miRNA:   3'- cAGCG-----------UGGUa--CUGCUGCGGauGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 14653 0.7 0.571642
Target:  5'- gGUCGauCACgGcGACGAUGCuCUGCAUCGc -3'
miRNA:   3'- -CAGC--GUGgUaCUGCUGCG-GAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 16107 0.69 0.593848
Target:  5'- cUCGCGCCAUGugagcaGCGGCcgGCCggcgGCGUCc -3'
miRNA:   3'- cAGCGUGGUAC------UGCUG--CGGa---UGUAGc -5'
26414 5' -53.5 NC_005345.2 + 16593 0.68 0.649781
Target:  5'- -aCGCugCgGUGGCGugGCCcgacccccucgGCGUCGg -3'
miRNA:   3'- caGCGugG-UACUGCugCGGa----------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 16673 0.7 0.538736
Target:  5'- --aGCGCCgucaggggGUGACGAcCGCCUGCggGUCGu -3'
miRNA:   3'- cagCGUGG--------UACUGCU-GCGGAUG--UAGC- -5'
26414 5' -53.5 NC_005345.2 + 18316 0.69 0.582724
Target:  5'- cGUCGCACUGgucGGCGucaccgGCGCCgUGCAUCu -3'
miRNA:   3'- -CAGCGUGGUa--CUGC------UGCGG-AUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 18739 0.68 0.649781
Target:  5'- -gCGCGCCAUGAgcgcgGACGCgU-CGUCGa -3'
miRNA:   3'- caGCGUGGUACUg----CUGCGgAuGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 19002 0.66 0.789592
Target:  5'- --gGC-CCGagcggGGCGGCGCCUcgACGUCGc -3'
miRNA:   3'- cagCGuGGUa----CUGCUGCGGA--UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 19404 0.69 0.605006
Target:  5'- cGUCGCGCCGagcucggucGGCuGCGCC-GCGUCGg -3'
miRNA:   3'- -CAGCGUGGUa--------CUGcUGCGGaUGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.