miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26414 5' -53.5 NC_005345.2 + 39168 1.09 0.001332
Target:  5'- uGUCGCACCAUGACGACGCCUACAUCGa -3'
miRNA:   3'- -CAGCGUGGUACUGCUGCGGAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 46211 0.67 0.716205
Target:  5'- -cCGC-CCGguUGAuCGACGuCCUGCGUUGg -3'
miRNA:   3'- caGCGuGGU--ACU-GCUGC-GGAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 41845 0.67 0.737784
Target:  5'- cGUCGCACCGcGGCu-CGuCCUGCGguUCGc -3'
miRNA:   3'- -CAGCGUGGUaCUGcuGC-GGAUGU--AGC- -5'
26414 5' -53.5 NC_005345.2 + 44441 0.66 0.79059
Target:  5'- uUgGCACCGUGAuCGcCGCCcuguucgccgcacggGCGUCGa -3'
miRNA:   3'- cAgCGUGGUACU-GCuGCGGa--------------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 3934 0.7 0.571642
Target:  5'- -cCGCACCcccGUGACcgGGCGUCUguACGUCGa -3'
miRNA:   3'- caGCGUGG---UACUG--CUGCGGA--UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 18316 0.69 0.582724
Target:  5'- cGUCGCACUGgucGGCGucaccgGCGCCgUGCAUCu -3'
miRNA:   3'- -CAGCGUGGUa--CUGC------UGCGG-AUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 42140 0.69 0.605006
Target:  5'- -cCGCACUcacgGUGGCGACGCUgccUGUCGg -3'
miRNA:   3'- caGCGUGG----UACUGCUGCGGau-GUAGC- -5'
26414 5' -53.5 NC_005345.2 + 44290 0.69 0.627385
Target:  5'- cGUCGCACUuUGGuacuCGACGUCacACGUCGg -3'
miRNA:   3'- -CAGCGUGGuACU----GCUGCGGa-UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 16593 0.68 0.649781
Target:  5'- -aCGCugCgGUGGCGugGCCcgacccccucgGCGUCGg -3'
miRNA:   3'- caGCGugG-UACUGCugCGGa----------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 28353 0.67 0.716205
Target:  5'- -aCGCGCCGU--CGGCGCCgACAgggCGg -3'
miRNA:   3'- caGCGUGGUAcuGCUGCGGaUGUa--GC- -5'
26414 5' -53.5 NC_005345.2 + 41786 0.68 0.694281
Target:  5'- aUCGCugCAcucacCGACGCCccggACGUCGa -3'
miRNA:   3'- cAGCGugGUacu--GCUGCGGa---UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 31245 0.68 0.638586
Target:  5'- aGUCGaACCGUGugcGCGGCGCCgugAUCGg -3'
miRNA:   3'- -CAGCgUGGUAC---UGCUGCGGaugUAGC- -5'
26414 5' -53.5 NC_005345.2 + 44153 0.73 0.387421
Target:  5'- cUCGuCACCAUGGCGAgCGCgUucguccGCAUCGg -3'
miRNA:   3'- cAGC-GUGGUACUGCU-GCGgA------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 26785 0.67 0.70528
Target:  5'- -gCGgAUCGUGGcCGGCGCC-GCGUCGc -3'
miRNA:   3'- caGCgUGGUACU-GCUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 30418 0.71 0.495937
Target:  5'- -cCGCGCuCAUGGCG-CGCC-ACAUCc -3'
miRNA:   3'- caGCGUG-GUACUGCuGCGGaUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 27122 0.68 0.638586
Target:  5'- --gGCGCCAcGGCGGCaccgGCCgGCGUCGa -3'
miRNA:   3'- cagCGUGGUaCUGCUG----CGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 5600 0.67 0.716205
Target:  5'- cUCGUGCCGUGG-GGCGCCggGC-UCGu -3'
miRNA:   3'- cAGCGUGGUACUgCUGCGGa-UGuAGC- -5'
26414 5' -53.5 NC_005345.2 + 22144 0.67 0.737784
Target:  5'- gGUCGCGCUAccGCGACGCUgugGCGa-- -3'
miRNA:   3'- -CAGCGUGGUacUGCUGCGGa--UGUagc -5'
26414 5' -53.5 NC_005345.2 + 19714 0.7 0.54964
Target:  5'- cUCGaCGCCGagGACGACGCCcGCAaCGc -3'
miRNA:   3'- cAGC-GUGGUa-CUGCUGCGGaUGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 27390 0.69 0.587169
Target:  5'- -gCGCGCUGUGcACGAuCGCCUcgacgcagcgguaccGCGUCGa -3'
miRNA:   3'- caGCGUGGUAC-UGCU-GCGGA---------------UGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.