miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26414 5' -53.5 NC_005345.2 + 39168 1.09 0.001332
Target:  5'- uGUCGCACCAUGACGACGCCUACAUCGa -3'
miRNA:   3'- -CAGCGUGGUACUGCUGCGGAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 22239 0.73 0.369425
Target:  5'- cGUCGUACCGgucGGCGAgcgcCGCCUGCAgCGc -3'
miRNA:   3'- -CAGCGUGGUa--CUGCU----GCGGAUGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 44153 0.73 0.387421
Target:  5'- cUCGuCACCAUGGCGAgCGCgUucguccGCAUCGg -3'
miRNA:   3'- cAGC-GUGGUACUGCU-GCGgA------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 30437 0.73 0.396632
Target:  5'- uUCGCcauGCgAUGACGACGCCgACcgCGa -3'
miRNA:   3'- cAGCG---UGgUACUGCUGCGGaUGuaGC- -5'
26414 5' -53.5 NC_005345.2 + 8309 0.72 0.454744
Target:  5'- --gGCGCCAUGGCGGCGCgCaGCAgcagCGu -3'
miRNA:   3'- cagCGUGGUACUGCUGCG-GaUGUa---GC- -5'
26414 5' -53.5 NC_005345.2 + 30418 0.71 0.495937
Target:  5'- -cCGCGCuCAUGGCG-CGCC-ACAUCc -3'
miRNA:   3'- caGCGUG-GUACUGCuGCGGaUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 45644 0.71 0.495937
Target:  5'- uUCGC-UCAUGACGuccuCGCCUGCGaCGa -3'
miRNA:   3'- cAGCGuGGUACUGCu---GCGGAUGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 38590 0.71 0.506501
Target:  5'- gGUCgGCAUCGUGGCGAgCGCCUcggACA-CGg -3'
miRNA:   3'- -CAG-CGUGGUACUGCU-GCGGA---UGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 10183 0.71 0.517159
Target:  5'- gGUCGCGCCGaucucGACcGCGCUcGCGUCGu -3'
miRNA:   3'- -CAGCGUGGUa----CUGcUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 16673 0.7 0.538736
Target:  5'- --aGCGCCgucaggggGUGACGAcCGCCUGCggGUCGu -3'
miRNA:   3'- cagCGUGG--------UACUGCU-GCGGAUG--UAGC- -5'
26414 5' -53.5 NC_005345.2 + 19714 0.7 0.54964
Target:  5'- cUCGaCGCCGagGACGACGCCcGCAaCGc -3'
miRNA:   3'- cAGC-GUGGUa-CUGCUGCGGaUGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 14653 0.7 0.571642
Target:  5'- gGUCGauCACgGcGACGAUGCuCUGCAUCGc -3'
miRNA:   3'- -CAGC--GUGgUaCUGCUGCG-GAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 3934 0.7 0.571642
Target:  5'- -cCGCACCcccGUGACcgGGCGUCUguACGUCGa -3'
miRNA:   3'- caGCGUGG---UACUG--CUGCGGA--UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 39051 0.69 0.579394
Target:  5'- cGUCGCgcaugugccgcucgGCCcggAUGACGAgCGCCUcgacgGCGUCGa -3'
miRNA:   3'- -CAGCG--------------UGG---UACUGCU-GCGGA-----UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 18316 0.69 0.582724
Target:  5'- cGUCGCACUGgucGGCGucaccgGCGCCgUGCAUCu -3'
miRNA:   3'- -CAGCGUGGUa--CUGC------UGCGG-AUGUAGc -5'
26414 5' -53.5 NC_005345.2 + 10336 0.69 0.582724
Target:  5'- uGUCGuCGCCGUcGACGACGUgaCgguCAUCGa -3'
miRNA:   3'- -CAGC-GUGGUA-CUGCUGCG--Gau-GUAGC- -5'
26414 5' -53.5 NC_005345.2 + 27390 0.69 0.587169
Target:  5'- -gCGCGCUGUGcACGAuCGCCUcgacgcagcgguaccGCGUCGa -3'
miRNA:   3'- caGCGUGGUAC-UGCU-GCGGA---------------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 24361 0.69 0.587169
Target:  5'- -cUGCACCAccuugccgaggucgGACGACGCCcGCAcuUCGg -3'
miRNA:   3'- caGCGUGGUa-------------CUGCUGCGGaUGU--AGC- -5'
26414 5' -53.5 NC_005345.2 + 16107 0.69 0.593848
Target:  5'- cUCGCGCCAUGugagcaGCGGCcgGCCggcgGCGUCc -3'
miRNA:   3'- cAGCGUGGUAC------UGCUG--CGGa---UGUAGc -5'
26414 5' -53.5 NC_005345.2 + 19404 0.69 0.605006
Target:  5'- cGUCGCGCCGagcucggucGGCuGCGCC-GCGUCGg -3'
miRNA:   3'- -CAGCGUGGUa--------CUGcUGCGGaUGUAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.