miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26414 5' -53.5 NC_005345.2 + 4061 0.68 0.660959
Target:  5'- aGUCGU-UCAUGGaaauCGCCUGCGUCGa -3'
miRNA:   3'- -CAGCGuGGUACUgcu-GCGGAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 41845 0.67 0.737784
Target:  5'- cGUCGCACCGcGGCu-CGuCCUGCGguUCGc -3'
miRNA:   3'- -CAGCGUGGUaCUGcuGC-GGAUGU--AGC- -5'
26414 5' -53.5 NC_005345.2 + 28353 0.67 0.716205
Target:  5'- -aCGCGCCGU--CGGCGCCgACAgggCGg -3'
miRNA:   3'- caGCGUGGUAcuGCUGCGGaUGUa--GC- -5'
26414 5' -53.5 NC_005345.2 + 41786 0.68 0.694281
Target:  5'- aUCGCugCAcucacCGACGCCccggACGUCGa -3'
miRNA:   3'- cAGCGugGUacu--GCUGCGGa---UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 10044 0.67 0.727043
Target:  5'- uGUCGagacggagaACC--GACGACGCCgACGUCGc -3'
miRNA:   3'- -CAGCg--------UGGuaCUGCUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 18739 0.68 0.649781
Target:  5'- -gCGCGCCAUGAgcgcgGACGCgU-CGUCGa -3'
miRNA:   3'- caGCGUGGUACUg----CUGCGgAuGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 19493 0.66 0.758922
Target:  5'- -aCaCGCCGUcGACGGCGaCCUucGCGUCGu -3'
miRNA:   3'- caGcGUGGUA-CUGCUGC-GGA--UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 30437 0.73 0.396632
Target:  5'- uUCGCcauGCgAUGACGACGCCgACcgCGa -3'
miRNA:   3'- cAGCG---UGgUACUGCUGCGGaUGuaGC- -5'
26414 5' -53.5 NC_005345.2 + 8309 0.72 0.454744
Target:  5'- --gGCGCCAUGGCGGCGCgCaGCAgcagCGu -3'
miRNA:   3'- cagCGUGGUACUGCUGCG-GaUGUa---GC- -5'
26414 5' -53.5 NC_005345.2 + 45644 0.71 0.495937
Target:  5'- uUCGC-UCAUGACGuccuCGCCUGCGaCGa -3'
miRNA:   3'- cAGCGuGGUACUGCu---GCGGAUGUaGC- -5'
26414 5' -53.5 NC_005345.2 + 37721 0.68 0.672109
Target:  5'- aUCGCGCUgcGgcGCGGCGCCggcuggucgGCGUCGu -3'
miRNA:   3'- cAGCGUGGuaC--UGCUGCGGa--------UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 44978 0.67 0.70528
Target:  5'- -cCGCcCCGUGA--GCGCCUgccGCGUCGa -3'
miRNA:   3'- caGCGuGGUACUgcUGCGGA---UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 6705 0.67 0.716205
Target:  5'- aUCGcCGCgCGUGGgGACGCCgaugACgAUCGg -3'
miRNA:   3'- cAGC-GUG-GUACUgCUGCGGa---UG-UAGC- -5'
26414 5' -53.5 NC_005345.2 + 32786 0.67 0.727043
Target:  5'- cGUCGCgAUCAccGCGGCGCCgGCcgCGa -3'
miRNA:   3'- -CAGCG-UGGUacUGCUGCGGaUGuaGC- -5'
26414 5' -53.5 NC_005345.2 + 10336 0.69 0.582724
Target:  5'- uGUCGuCGCCGUcGACGACGUgaCgguCAUCGa -3'
miRNA:   3'- -CAGC-GUGGUA-CUGCUGCG--Gau-GUAGC- -5'
26414 5' -53.5 NC_005345.2 + 39051 0.69 0.579394
Target:  5'- cGUCGCgcaugugccgcucgGCCcggAUGACGAgCGCCUcgacgGCGUCGa -3'
miRNA:   3'- -CAGCG--------------UGG---UACUGCU-GCGGA-----UGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 14653 0.7 0.571642
Target:  5'- gGUCGauCACgGcGACGAUGCuCUGCAUCGc -3'
miRNA:   3'- -CAGC--GUGgUaCUGCUGCG-GAUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 16673 0.7 0.538736
Target:  5'- --aGCGCCgucaggggGUGACGAcCGCCUGCggGUCGu -3'
miRNA:   3'- cagCGUGG--------UACUGCU-GCGGAUG--UAGC- -5'
26414 5' -53.5 NC_005345.2 + 10183 0.71 0.517159
Target:  5'- gGUCGCGCCGaucucGACcGCGCUcGCGUCGu -3'
miRNA:   3'- -CAGCGUGGUa----CUGcUGCGGaUGUAGC- -5'
26414 5' -53.5 NC_005345.2 + 38590 0.71 0.506501
Target:  5'- gGUCgGCAUCGUGGCGAgCGCCUcggACA-CGg -3'
miRNA:   3'- -CAG-CGUGGUACUGCU-GCGGA---UGUaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.