miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26415 5' -54.3 NC_005345.2 + 611 0.66 0.775769
Target:  5'- -cGCAUCCUGACCaaccuGUcgcagcucgaacUCGCCACu- -3'
miRNA:   3'- ccUGUAGGACUGGcu---CA------------AGCGGUGca -5'
26415 5' -54.3 NC_005345.2 + 43663 0.66 0.775768
Target:  5'- cGuCGUgCCUGccgccGCCGGGUggcugaucagccUCGCCGCGUg -3'
miRNA:   3'- cCuGUA-GGAC-----UGGCUCA------------AGCGGUGCA- -5'
26415 5' -54.3 NC_005345.2 + 43115 0.66 0.775768
Target:  5'- gGGGCGUCCcgGACCG-GUg-GCCcaACGg -3'
miRNA:   3'- -CCUGUAGGa-CUGGCuCAagCGG--UGCa -5'
26415 5' -54.3 NC_005345.2 + 47497 0.66 0.775768
Target:  5'- cGGACGUacgaaccacacUCgGuACCgcGAGUUCGCCGCGa -3'
miRNA:   3'- -CCUGUA-----------GGaC-UGG--CUCAAGCGGUGCa -5'
26415 5' -54.3 NC_005345.2 + 46373 0.66 0.775768
Target:  5'- cGACAagCCguACCGAGgcCGCCGCGc -3'
miRNA:   3'- cCUGUa-GGacUGGCUCaaGCGGUGCa -5'
26415 5' -54.3 NC_005345.2 + 48729 0.66 0.769687
Target:  5'- gGGACA-CCggccgcauggaguggUGGCCGcgGGUgcacgaccuUCGCCACGUg -3'
miRNA:   3'- -CCUGUaGG---------------ACUGGC--UCA---------AGCGGUGCA- -5'
26415 5' -54.3 NC_005345.2 + 10563 0.66 0.765604
Target:  5'- aGGuaAUCCcGGCCGcGagCGCCACGUa -3'
miRNA:   3'- -CCugUAGGaCUGGCuCaaGCGGUGCA- -5'
26415 5' -54.3 NC_005345.2 + 18630 0.66 0.761498
Target:  5'- cGAuCGUCCgcugccgguacccGcCCGGGUUCGCCAUGa -3'
miRNA:   3'- cCU-GUAGGa------------CuGGCUCAAGCGGUGCa -5'
26415 5' -54.3 NC_005345.2 + 43291 0.66 0.744869
Target:  5'- cGACGUCCUcGgCGAGgucgacgCGCCACa- -3'
miRNA:   3'- cCUGUAGGAcUgGCUCaa-----GCGGUGca -5'
26415 5' -54.3 NC_005345.2 + 18182 0.66 0.744868
Target:  5'- uGGGCGUacaCCgucgGcgaggcgcgcGCCGAGUggggCGCCGCGUu -3'
miRNA:   3'- -CCUGUA---GGa---C----------UGGCUCAa---GCGGUGCA- -5'
26415 5' -54.3 NC_005345.2 + 24196 0.66 0.734322
Target:  5'- cGGCcgCCcgucggGGCCGAGUUCgaGUCGCGg -3'
miRNA:   3'- cCUGuaGGa-----CUGGCUCAAG--CGGUGCa -5'
26415 5' -54.3 NC_005345.2 + 36901 0.67 0.723671
Target:  5'- cGACGaagCggGACCGGGUgagcgggucaUCGCCACGg -3'
miRNA:   3'- cCUGUa--GgaCUGGCUCA----------AGCGGUGCa -5'
26415 5' -54.3 NC_005345.2 + 33013 0.67 0.723671
Target:  5'- gGGGCGUCgacGAUCGGGcUCGgCCGCGg -3'
miRNA:   3'- -CCUGUAGga-CUGGCUCaAGC-GGUGCa -5'
26415 5' -54.3 NC_005345.2 + 19160 0.67 0.712928
Target:  5'- cGGAC--CCcGGCCGAGgaCGCCgACGa -3'
miRNA:   3'- -CCUGuaGGaCUGGCUCaaGCGG-UGCa -5'
26415 5' -54.3 NC_005345.2 + 12861 0.67 0.70536
Target:  5'- uGACGUCgUGgggguggcucgccGCCGGGUggccgcucgccucgaUCGCCGCGa -3'
miRNA:   3'- cCUGUAGgAC-------------UGGCUCA---------------AGCGGUGCa -5'
26415 5' -54.3 NC_005345.2 + 27878 0.67 0.702105
Target:  5'- cGAgGUCCcGGCCGGGUUCG--ACGUa -3'
miRNA:   3'- cCUgUAGGaCUGGCUCAAGCggUGCA- -5'
26415 5' -54.3 NC_005345.2 + 27684 0.67 0.702105
Target:  5'- cGGCcgCgUGACCGGGcgCGCCgacACGg -3'
miRNA:   3'- cCUGuaGgACUGGCUCaaGCGG---UGCa -5'
26415 5' -54.3 NC_005345.2 + 8249 0.68 0.64718
Target:  5'- aGGACGUC---GCCGGGUUCGagCGCGg -3'
miRNA:   3'- -CCUGUAGgacUGGCUCAAGCg-GUGCa -5'
26415 5' -54.3 NC_005345.2 + 4565 0.68 0.63611
Target:  5'- uGACGUCCUcuuucagucGAUCG-GUgaUCGCCGCGa -3'
miRNA:   3'- cCUGUAGGA---------CUGGCuCA--AGCGGUGCa -5'
26415 5' -54.3 NC_005345.2 + 4775 0.68 0.625036
Target:  5'- uGGGCccgugCCUuuCCGGGcUCGCCGCGg -3'
miRNA:   3'- -CCUGua---GGAcuGGCUCaAGCGGUGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.