Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26415 | 5' | -54.3 | NC_005345.2 | + | 18630 | 0.66 | 0.761498 |
Target: 5'- cGAuCGUCCgcugccgguacccGcCCGGGUUCGCCAUGa -3' miRNA: 3'- cCU-GUAGGa------------CuGGCUCAAGCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 10563 | 0.66 | 0.765604 |
Target: 5'- aGGuaAUCCcGGCCGcGagCGCCACGUa -3' miRNA: 3'- -CCugUAGGaCUGGCuCaaGCGGUGCA- -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 48729 | 0.66 | 0.769687 |
Target: 5'- gGGACA-CCggccgcauggaguggUGGCCGcgGGUgcacgaccuUCGCCACGUg -3' miRNA: 3'- -CCUGUaGG---------------ACUGGC--UCA---------AGCGGUGCA- -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 46373 | 0.66 | 0.775768 |
Target: 5'- cGACAagCCguACCGAGgcCGCCGCGc -3' miRNA: 3'- cCUGUa-GGacUGGCUCaaGCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 43663 | 0.66 | 0.775768 |
Target: 5'- cGuCGUgCCUGccgccGCCGGGUggcugaucagccUCGCCGCGUg -3' miRNA: 3'- cCuGUA-GGAC-----UGGCUCA------------AGCGGUGCA- -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 43115 | 0.66 | 0.775768 |
Target: 5'- gGGGCGUCCcgGACCG-GUg-GCCcaACGg -3' miRNA: 3'- -CCUGUAGGa-CUGGCuCAagCGG--UGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 47497 | 0.66 | 0.775768 |
Target: 5'- cGGACGUacgaaccacacUCgGuACCgcGAGUUCGCCGCGa -3' miRNA: 3'- -CCUGUA-----------GGaC-UGG--CUCAAGCGGUGCa -5' |
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26415 | 5' | -54.3 | NC_005345.2 | + | 611 | 0.66 | 0.775769 |
Target: 5'- -cGCAUCCUGACCaaccuGUcgcagcucgaacUCGCCACu- -3' miRNA: 3'- ccUGUAGGACUGGcu---CA------------AGCGGUGca -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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