miRNA display CGI


Results 21 - 40 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26416 3' -59.2 NC_005345.2 + 4474 0.66 0.490279
Target:  5'- -cCGGCGGCcguguccGGC-UCGACGAgcCGuGCCCa -3'
miRNA:   3'- uaGCUGCCG-------CUGcAGCUGCU--GC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 4555 0.68 0.397192
Target:  5'- -aCGACGGCaGCGUguaCGACuGCuGCCCg -3'
miRNA:   3'- uaGCUGCCGcUGCA---GCUGcUGcCGGG- -5'
26416 3' -59.2 NC_005345.2 + 4851 0.66 0.501258
Target:  5'- -cCGACGuGUGACGUCGaguaccaaaguGCGACGaagauGCCg -3'
miRNA:   3'- uaGCUGC-CGCUGCAGC-----------UGCUGC-----CGGg -5'
26416 3' -59.2 NC_005345.2 + 5037 0.67 0.461891
Target:  5'- cGUCGACGaGCGcaGCaUCGAgGGCGaGCCg -3'
miRNA:   3'- -UAGCUGC-CGC--UGcAGCUgCUGC-CGGg -5'
26416 3' -59.2 NC_005345.2 + 5424 0.74 0.155249
Target:  5'- -aCGGCGGCGACGacggcguucguaUCGAgguCGAggcCGGCCCa -3'
miRNA:   3'- uaGCUGCCGCUGC------------AGCU---GCU---GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 5439 0.68 0.415083
Target:  5'- uUCGGCGGCGcccGgGUCGGCcguaggGGCGGUgCCg -3'
miRNA:   3'- uAGCUGCCGC---UgCAGCUG------CUGCCG-GG- -5'
26416 3' -59.2 NC_005345.2 + 5490 0.68 0.388433
Target:  5'- -cCGGCGGCGGCaggC-ACGACGGUgCg -3'
miRNA:   3'- uaGCUGCCGCUGca-GcUGCUGCCGgG- -5'
26416 3' -59.2 NC_005345.2 + 5595 0.75 0.147204
Target:  5'- -gCGGuCGGCGAgcuUGUCGGCGACGaGCUCg -3'
miRNA:   3'- uaGCU-GCCGCU---GCAGCUGCUGC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 5968 0.66 0.491273
Target:  5'- -gCGGCGGCGGCagcuguggcuGUCGACuacaaGACGagcgcgaagaaGCCCg -3'
miRNA:   3'- uaGCUGCCGCUG----------CAGCUG-----CUGC-----------CGGG- -5'
26416 3' -59.2 NC_005345.2 + 6486 0.66 0.521491
Target:  5'- -aCGGCGGCGagcccgagGCGUgGACGccgcAgGGCUCg -3'
miRNA:   3'- uaGCUGCCGC--------UGCAgCUGC----UgCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 6664 0.74 0.168064
Target:  5'- -gCGAacgUGGCGAUcuccUCGACGACGGCCUc -3'
miRNA:   3'- uaGCU---GCCGCUGc---AGCUGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 7001 0.67 0.461891
Target:  5'- uGUCGAUGGCugcuGCGaUCGACGcCGGgUCg -3'
miRNA:   3'- -UAGCUGCCGc---UGC-AGCUGCuGCCgGG- -5'
26416 3' -59.2 NC_005345.2 + 7035 0.79 0.08084
Target:  5'- gGUCGAcCGGcCGGCGaUCGA-GGCGGCCCg -3'
miRNA:   3'- -UAGCU-GCC-GCUGC-AGCUgCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 7115 0.66 0.515386
Target:  5'- -gCGACGuGUGGCGcCGcGCGAaccgggcggggcacgUGGCCCg -3'
miRNA:   3'- uaGCUGC-CGCUGCaGC-UGCU---------------GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 7236 0.76 0.133674
Target:  5'- uGUCGuCGGCGACGaccagggCGACGACGagcagcugcucgacaGCCCg -3'
miRNA:   3'- -UAGCuGCCGCUGCa------GCUGCUGC---------------CGGG- -5'
26416 3' -59.2 NC_005345.2 + 7325 0.68 0.406076
Target:  5'- aGUCGGCGGaCGccgaGUCGcacGCGGugUGGCCCg -3'
miRNA:   3'- -UAGCUGCC-GCug--CAGC---UGCU--GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 7513 0.66 0.501258
Target:  5'- uUCgGugGGCGugcUGcCGGCGGCGGUCg -3'
miRNA:   3'- uAG-CugCCGCu--GCaGCUGCUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 7850 0.67 0.481379
Target:  5'- -cCGcCGGCGcCGgcacCGA-GGCGGCCCc -3'
miRNA:   3'- uaGCuGCCGCuGCa---GCUgCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 8118 0.7 0.30807
Target:  5'- -cCGAccCGGcCGcCGUCGuCGACGGCUCu -3'
miRNA:   3'- uaGCU--GCC-GCuGCAGCuGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 8315 0.69 0.354693
Target:  5'- -aUGGCGGCGcgcagcagcaGCGUucCGGCGGCGGUgCa -3'
miRNA:   3'- uaGCUGCCGC----------UGCA--GCUGCUGCCGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.