miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26416 3' -59.2 NC_005345.2 + 779 0.67 0.452303
Target:  5'- -cCGGCGGCGGgGgauGcCGACcgGGCCCg -3'
miRNA:   3'- uaGCUGCCGCUgCag-CuGCUG--CCGGG- -5'
26416 3' -59.2 NC_005345.2 + 924 0.67 0.471584
Target:  5'- gAUCGAcCGGCGucACGUCGuCGA-GGUCg -3'
miRNA:   3'- -UAGCU-GCCGC--UGCAGCuGCUgCCGGg -5'
26416 3' -59.2 NC_005345.2 + 965 0.71 0.253399
Target:  5'- -aCGcCGGC--CGUCcuuGACGGCGGCCCg -3'
miRNA:   3'- uaGCuGCCGcuGCAG---CUGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 1089 0.69 0.338615
Target:  5'- cUCGACGGCGACGagCGGUG-CGcGCCg -3'
miRNA:   3'- uAGCUGCCGCUGCa-GCUGCuGC-CGGg -5'
26416 3' -59.2 NC_005345.2 + 1472 0.68 0.415083
Target:  5'- cGUCGGCcGUGAUG-CGGa-GCGGCCCg -3'
miRNA:   3'- -UAGCUGcCGCUGCaGCUgcUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 1751 0.66 0.521491
Target:  5'- --aGGCaGGCGACGuUUGAcCGuCGGCCa -3'
miRNA:   3'- uagCUG-CCGCUGC-AGCU-GCuGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 2019 0.67 0.461891
Target:  5'- -gCGuuccuCGGCGuccuCGUCGAgCGggcccggcGCGGCCCg -3'
miRNA:   3'- uaGCu----GCCGCu---GCAGCU-GC--------UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 2357 0.66 0.491272
Target:  5'- cUUGGCGGCGcaGCccgGUCG-CGACcucgcgGGCCCa -3'
miRNA:   3'- uAGCUGCCGC--UG---CAGCuGCUG------CCGGG- -5'
26416 3' -59.2 NC_005345.2 + 2527 0.77 0.103581
Target:  5'- uGUCaACGGCGACGgggcaccCGGCGcCGGCCCc -3'
miRNA:   3'- -UAGcUGCCGCUGCa------GCUGCuGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 2546 0.67 0.442826
Target:  5'- -aCG-CGGUGGCGaCGGCGAguGCCCg -3'
miRNA:   3'- uaGCuGCCGCUGCaGCUGCUgcCGGG- -5'
26416 3' -59.2 NC_005345.2 + 2708 0.72 0.229188
Target:  5'- uGUCGGCGGCgccGAUGUcucccgcccgccCGGCGaugacaGCGGCCCg -3'
miRNA:   3'- -UAGCUGCCG---CUGCA------------GCUGC------UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 2901 0.73 0.196561
Target:  5'- cUCGACGaGCGGa-UCGGCGgaccgggcaGCGGCCCa -3'
miRNA:   3'- uAGCUGC-CGCUgcAGCUGC---------UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 3153 0.7 0.323073
Target:  5'- -cCGACGGCGucggcgagcuCGUCGGggugccggguCGGCGaGCCCu -3'
miRNA:   3'- uaGCUGCCGCu---------GCAGCU----------GCUGC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 3383 0.68 0.397192
Target:  5'- cUgGGCGGCGAgGUcCGGCG-CGGCa- -3'
miRNA:   3'- uAgCUGCCGCUgCA-GCUGCuGCCGgg -5'
26416 3' -59.2 NC_005345.2 + 3429 0.74 0.159419
Target:  5'- -gCG-CGGCGGCGggCGGCGAUgcgGGCCCc -3'
miRNA:   3'- uaGCuGCCGCUGCa-GCUGCUG---CCGGG- -5'
26416 3' -59.2 NC_005345.2 + 3535 0.75 0.137313
Target:  5'- uUCGGCGGUGACGcugugacgaucacccUCGACccguucGCGGCCCc -3'
miRNA:   3'- uAGCUGCCGCUGC---------------AGCUGc-----UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 3724 0.68 0.424213
Target:  5'- -gUGcCuGCGACGUCGACGacGCGGUCg -3'
miRNA:   3'- uaGCuGcCGCUGCAGCUGC--UGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 3840 0.7 0.286572
Target:  5'- gGUCGGCGGCGuGCGgacccggcugaUCGGCGuCGGCg- -3'
miRNA:   3'- -UAGCUGCCGC-UGC-----------AGCUGCuGCCGgg -5'
26416 3' -59.2 NC_005345.2 + 3978 0.67 0.47061
Target:  5'- cUCGGCuGCGACGUCaGGCccggucgGACGaGCCg -3'
miRNA:   3'- uAGCUGcCGCUGCAG-CUG-------CUGC-CGGg -5'
26416 3' -59.2 NC_005345.2 + 4386 0.67 0.452304
Target:  5'- --gGACGGCGccgcaugaGCG-CGAuCGACaaGGCCCg -3'
miRNA:   3'- uagCUGCCGC--------UGCaGCU-GCUG--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.