miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26416 3' -59.2 NC_005345.2 + 40259 1.1 0.000389
Target:  5'- gAUCGACGGCGACGUCGACGACGGCCCg -3'
miRNA:   3'- -UAGCUGCCGCUGCAGCUGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 3535 0.75 0.137313
Target:  5'- uUCGGCGGUGACGcugugacgaucacccUCGACccguucGCGGCCCc -3'
miRNA:   3'- uAGCUGCCGCUGC---------------AGCUGc-----UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 28315 0.74 0.177127
Target:  5'- -gCGACGGCGACGacgaccaggaCGACGACGaGCgCg -3'
miRNA:   3'- uaGCUGCCGCUGCa---------GCUGCUGC-CGgG- -5'
26416 3' -59.2 NC_005345.2 + 30967 0.66 0.542032
Target:  5'- cAUUGgaACGGCGcGCGguUCGAgGugauCGGCCCg -3'
miRNA:   3'- -UAGC--UGCCGC-UGC--AGCUgCu---GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 7035 0.79 0.08084
Target:  5'- gGUCGAcCGGcCGGCGaUCGA-GGCGGCCCg -3'
miRNA:   3'- -UAGCU-GCC-GCUGC-AGCUgCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 11835 0.79 0.081064
Target:  5'- -cCGugGGCGAgGUCGACGccacggcgugggcauCGGCCCu -3'
miRNA:   3'- uaGCugCCGCUgCAGCUGCu--------------GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 2527 0.77 0.103581
Target:  5'- uGUCaACGGCGACGgggcaccCGGCGcCGGCCCc -3'
miRNA:   3'- -UAGcUGCCGCUGCa------GCUGCuGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 44491 0.77 0.109695
Target:  5'- -gCGAaGGCGACGgccgaggcacagcaGGCGACGGCCCg -3'
miRNA:   3'- uaGCUgCCGCUGCag------------CUGCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 13446 0.76 0.118697
Target:  5'- -cCGGuacCGGCGACGUCGcCGACGGCg- -3'
miRNA:   3'- uaGCU---GCCGCUGCAGCuGCUGCCGgg -5'
26416 3' -59.2 NC_005345.2 + 30066 0.75 0.135847
Target:  5'- -cCGACGGCGAgcuCaUCGGCGAgcaCGGCCCc -3'
miRNA:   3'- uaGCUGCCGCU---GcAGCUGCU---GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 39736 0.76 0.126662
Target:  5'- cGUCGGCGagaccccgcugccacGCGcCGUCGACGACGGCg- -3'
miRNA:   3'- -UAGCUGC---------------CGCuGCAGCUGCUGCCGgg -5'
26416 3' -59.2 NC_005345.2 + 42288 0.76 0.118697
Target:  5'- cUCGAcCGGCG-CGUCGugGGCGuCCCu -3'
miRNA:   3'- uAGCU-GCCGCuGCAGCugCUGCcGGG- -5'
26416 3' -59.2 NC_005345.2 + 28252 0.81 0.057681
Target:  5'- -aCGACGGCGAgGUCGACGACGacgcgaucgcgaaGCUCg -3'
miRNA:   3'- uaGCUGCCGCUgCAGCUGCUGC-------------CGGG- -5'
26416 3' -59.2 NC_005345.2 + 13263 0.76 0.128729
Target:  5'- -aCGAcCGGCGAgcagcuCGUCGGCGACGacGCCCc -3'
miRNA:   3'- uaGCU-GCCGCU------GCAGCUGCUGC--CGGG- -5'
26416 3' -59.2 NC_005345.2 + 8684 0.81 0.057843
Target:  5'- -gCGGCGGUGGcCGUgaCGugGGCGGCCCg -3'
miRNA:   3'- uaGCUGCCGCU-GCA--GCugCUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 34757 0.76 0.118697
Target:  5'- -gCGGCGGCGGCGgUGACGcGCGGCUa -3'
miRNA:   3'- uaGCUGCCGCUGCaGCUGC-UGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 7236 0.76 0.133674
Target:  5'- uGUCGuCGGCGACGaccagggCGACGACGagcagcugcucgacaGCCCg -3'
miRNA:   3'- -UAGCuGCCGCUGCa------GCUGCUGC---------------CGGG- -5'
26416 3' -59.2 NC_005345.2 + 22247 0.74 0.177127
Target:  5'- cGUCGACGGCGAgGUgcUGcCGugGGCgCa -3'
miRNA:   3'- -UAGCUGCCGCUgCA--GCuGCugCCGgG- -5'
26416 3' -59.2 NC_005345.2 + 47875 0.79 0.076476
Target:  5'- -gCGACGGUGACGUCGGcCGGCGuGCUg -3'
miRNA:   3'- uaGCUGCCGCUGCAGCU-GCUGC-CGGg -5'
26416 3' -59.2 NC_005345.2 + 30133 0.78 0.092812
Target:  5'- cUCgGGCGGCGACGUCGA-GGCGccGCCCc -3'
miRNA:   3'- uAG-CUGCCGCUGCAGCUgCUGC--CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.