miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26416 3' -59.2 NC_005345.2 + 30967 0.66 0.542032
Target:  5'- cAUUGgaACGGCGcGCGguUCGAgGugauCGGCCCg -3'
miRNA:   3'- -UAGC--UGCCGC-UGC--AGCUgCu---GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 23290 0.66 0.52149
Target:  5'- gAUCaGCGGCGACGgcCGGCcguuguccuCGGUCCg -3'
miRNA:   3'- -UAGcUGCCGCUGCa-GCUGcu-------GCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 37720 0.66 0.511333
Target:  5'- gAUCGcGCuGCGGCG-CGGCGcCGGCUg -3'
miRNA:   3'- -UAGC-UGcCGCUGCaGCUGCuGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 30457 0.66 0.511333
Target:  5'- -cCGACcGCGAUcaggaaGaCGACGACGGCaCCc -3'
miRNA:   3'- uaGCUGcCGCUG------CaGCUGCUGCCG-GG- -5'
26416 3' -59.2 NC_005345.2 + 10853 0.66 0.511333
Target:  5'- -cCGcCGGCGAgGUaguaGuCGACGGgCCa -3'
miRNA:   3'- uaGCuGCCGCUgCAg---CuGCUGCCgGG- -5'
26416 3' -59.2 NC_005345.2 + 34363 0.66 0.510322
Target:  5'- cGUCGAagcgcacCGG-GGCGUUGcaguCGACGaGCCCg -3'
miRNA:   3'- -UAGCU-------GCCgCUGCAGCu---GCUGC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 4851 0.66 0.501258
Target:  5'- -cCGACGuGUGACGUCGaguaccaaaguGCGACGaagauGCCg -3'
miRNA:   3'- uaGCUGC-CGCUGCAGC-----------UGCUGC-----CGGg -5'
26416 3' -59.2 NC_005345.2 + 31028 0.66 0.501258
Target:  5'- -aCGACGGCGcCGgcgagugCGGCGACGaucuUCCa -3'
miRNA:   3'- uaGCUGCCGCuGCa------GCUGCUGCc---GGG- -5'
26416 3' -59.2 NC_005345.2 + 25140 0.66 0.501258
Target:  5'- cUCGGCGaGCGcgaucGCGcCGACGaACGGCg- -3'
miRNA:   3'- uAGCUGC-CGC-----UGCaGCUGC-UGCCGgg -5'
26416 3' -59.2 NC_005345.2 + 34921 0.66 0.52149
Target:  5'- --gGGCGuGCGcaggGCGgCGGCGAgGGCCUg -3'
miRNA:   3'- uagCUGC-CGC----UGCaGCUGCUgCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 11405 0.66 0.52149
Target:  5'- gGUCGACcGauucgGugGUCGACGACagcagguuGCCCg -3'
miRNA:   3'- -UAGCUGcCg----CugCAGCUGCUGc-------CGGG- -5'
26416 3' -59.2 NC_005345.2 + 37637 0.66 0.52149
Target:  5'- uUCGugaGCGGCugcaguccGGCGUCGguGCGggccgccugcGCGGCCCu -3'
miRNA:   3'- uAGC---UGCCG--------CUGCAGC--UGC----------UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 31409 0.66 0.542032
Target:  5'- -gUGAgGGCGaguGCGcaccCGGCGAUGaGCCCg -3'
miRNA:   3'- uaGCUgCCGC---UGCa---GCUGCUGC-CGGG- -5'
26416 3' -59.2 NC_005345.2 + 8736 0.66 0.542032
Target:  5'- cGUCGGUGGCGAgCG-CGACGACuGCa- -3'
miRNA:   3'- -UAGCUGCCGCU-GCaGCUGCUGcCGgg -5'
26416 3' -59.2 NC_005345.2 + 34999 0.66 0.542032
Target:  5'- cUCGGCGccGgGGCG-CuGCGGCGGCCa -3'
miRNA:   3'- uAGCUGC--CgCUGCaGcUGCUGCCGGg -5'
26416 3' -59.2 NC_005345.2 + 16493 0.66 0.539965
Target:  5'- cUCGACGGCGucgagguugaaGUCGA--ACGGCUUg -3'
miRNA:   3'- uAGCUGCCGCug---------CAGCUgcUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 35601 0.66 0.531725
Target:  5'- -cCGugGaUGugGUCGACGgacagcugcccGCGGUCCc -3'
miRNA:   3'- uaGCugCcGCugCAGCUGC-----------UGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 9403 0.66 0.531725
Target:  5'- cGUCGACGGCG-CGUgGcaGCGG-GGUCUc -3'
miRNA:   3'- -UAGCUGCCGCuGCAgC--UGCUgCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 27138 0.66 0.52149
Target:  5'- -cCGGCGGgcccggcaugcCGcCGUgCGGCaGCGGCCCg -3'
miRNA:   3'- uaGCUGCC-----------GCuGCA-GCUGcUGCCGGG- -5'
26416 3' -59.2 NC_005345.2 + 15752 0.66 0.52149
Target:  5'- -cCGACGcCGACcUCGACcGCGGCUg -3'
miRNA:   3'- uaGCUGCcGCUGcAGCUGcUGCCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.