Results 1 - 20 of 219 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26416 | 3' | -59.2 | NC_005345.2 | + | 40259 | 1.1 | 0.000389 |
Target: 5'- gAUCGACGGCGACGUCGACGACGGCCCg -3' miRNA: 3'- -UAGCUGCCGCUGCAGCUGCUGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 15042 | 0.83 | 0.037881 |
Target: 5'- cGUCGGCGGCGAUGUCGccgucgcggGCGcCGGCCUg -3' miRNA: 3'- -UAGCUGCCGCUGCAGC---------UGCuGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 37418 | 0.81 | 0.051693 |
Target: 5'- aGUCGuGCGGCGAguUGguacgCGGCGGCGGCCCg -3' miRNA: 3'- -UAGC-UGCCGCU--GCa----GCUGCUGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 28252 | 0.81 | 0.057681 |
Target: 5'- -aCGACGGCGAgGUCGACGACGacgcgaucgcgaaGCUCg -3' miRNA: 3'- uaGCUGCCGCUgCAGCUGCUGC-------------CGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 8684 | 0.81 | 0.057843 |
Target: 5'- -gCGGCGGUGGcCGUgaCGugGGCGGCCCg -3' miRNA: 3'- uaGCUGCCGCU-GCA--GCugCUGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 33007 | 0.8 | 0.064701 |
Target: 5'- -gUGGCGGgGGCGUCGACGAUcgGGCUCg -3' miRNA: 3'- uaGCUGCCgCUGCAGCUGCUG--CCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 22817 | 0.79 | 0.069766 |
Target: 5'- --gGACGGCGACGgcacgaacggcugaUCGACGACGGUCa -3' miRNA: 3'- uagCUGCCGCUGC--------------AGCUGCUGCCGGg -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 40057 | 0.79 | 0.07438 |
Target: 5'- -gCGACGuGCgGGCGgucgccggCGACGGCGGCCCg -3' miRNA: 3'- uaGCUGC-CG-CUGCa-------GCUGCUGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 47875 | 0.79 | 0.076476 |
Target: 5'- -gCGACGGUGACGUCGGcCGGCGuGCUg -3' miRNA: 3'- uaGCUGCCGCUGCAGCU-GCUGC-CGGg -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 7035 | 0.79 | 0.08084 |
Target: 5'- gGUCGAcCGGcCGGCGaUCGA-GGCGGCCCg -3' miRNA: 3'- -UAGCU-GCC-GCUGC-AGCUgCUGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 11835 | 0.79 | 0.081064 |
Target: 5'- -cCGugGGCGAgGUCGACGccacggcgugggcauCGGCCCu -3' miRNA: 3'- uaGCugCCGCUgCAGCUGCu--------------GCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 30133 | 0.78 | 0.092812 |
Target: 5'- cUCgGGCGGCGACGUCGA-GGCGccGCCCc -3' miRNA: 3'- uAG-CUGCCGCUGCAGCUgCUGC--CGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 2527 | 0.77 | 0.103581 |
Target: 5'- uGUCaACGGCGACGgggcaccCGGCGcCGGCCCc -3' miRNA: 3'- -UAGcUGCCGCUGCa------GCUGCuGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 30233 | 0.77 | 0.103581 |
Target: 5'- -cCGGCGGUGAgccgGUCGACGACGGUgCg -3' miRNA: 3'- uaGCUGCCGCUg---CAGCUGCUGCCGgG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 37232 | 0.77 | 0.109397 |
Target: 5'- uGUCGGCGGCGugccguaguaGCGggCGACGGCGGCg- -3' miRNA: 3'- -UAGCUGCCGC----------UGCa-GCUGCUGCCGgg -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 44491 | 0.77 | 0.109695 |
Target: 5'- -gCGAaGGCGACGgccgaggcacagcaGGCGACGGCCCg -3' miRNA: 3'- uaGCUgCCGCUGCag------------CUGCUGCCGGG- -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 34757 | 0.76 | 0.118697 |
Target: 5'- -gCGGCGGCGGCGgUGACGcGCGGCUa -3' miRNA: 3'- uaGCUGCCGCUGCaGCUGC-UGCCGGg -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 13446 | 0.76 | 0.118697 |
Target: 5'- -cCGGuacCGGCGACGUCGcCGACGGCg- -3' miRNA: 3'- uaGCU---GCCGCUGCAGCuGCUGCCGgg -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 38387 | 0.76 | 0.118697 |
Target: 5'- cUCGACGGCcggcaggggcucGGCGUCGGCGacgacaucgagcGCGGCCa -3' miRNA: 3'- uAGCUGCCG------------CUGCAGCUGC------------UGCCGGg -5' |
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26416 | 3' | -59.2 | NC_005345.2 | + | 42288 | 0.76 | 0.118697 |
Target: 5'- cUCGAcCGGCG-CGUCGugGGCGuCCCu -3' miRNA: 3'- uAGCU-GCCGCuGCAGCugCUGCcGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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