miRNA display CGI


Results 41 - 60 of 236 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26417 5' -58.1 NC_005345.2 + 645 0.66 0.551625
Target:  5'- gCCUGcgGCGuGA-GCGgGACCGUGCg -3'
miRNA:   3'- -GGGCuuUGCcCUaCGCgCUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 11712 0.66 0.551625
Target:  5'- gCCGAccAGCGGGc--CGCcGCCGCGUa -3'
miRNA:   3'- gGGCU--UUGCCCuacGCGcUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 41516 0.66 0.551625
Target:  5'- uCCCG-AACGcGGA-GCGCGA--GCGUCu -3'
miRNA:   3'- -GGGCuUUGC-CCUaCGCGCUggCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 31189 0.66 0.551625
Target:  5'- aCUCGGgcgcGGCGGG-UGCgGCGGgUGCGCa -3'
miRNA:   3'- -GGGCU----UUGCCCuACG-CGCUgGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 14781 0.66 0.551625
Target:  5'- gCCGAcGACGGGuccauCGCGaacaguGCgGCGCCg -3'
miRNA:   3'- gGGCU-UUGCCCuac--GCGC------UGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 36352 0.66 0.551625
Target:  5'- gCCGAGcggcucggGCGGGucguUGCGgGugguccACgCGCGCCa -3'
miRNA:   3'- gGGCUU--------UGCCCu---ACGCgC------UG-GCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 31437 0.66 0.551625
Target:  5'- gCCCGAggaugAGCGcGGGUGCGag---GCGCCg -3'
miRNA:   3'- -GGGCU-----UUGC-CCUACGCgcuggCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 41546 0.66 0.551625
Target:  5'- aCCUGGucgacGACGucGUGCGCGcgcucGCCGUGCUc -3'
miRNA:   3'- -GGGCU-----UUGCccUACGCGC-----UGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 40077 0.67 0.541216
Target:  5'- aCCGucgaccGCGGGcagcaAUG-GCG-CCGCGCCu -3'
miRNA:   3'- gGGCuu----UGCCC-----UACgCGCuGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 6617 0.67 0.541216
Target:  5'- aCCGGcGGCGGuugcgcccgGcgGUGCGACgGCGUCa -3'
miRNA:   3'- gGGCU-UUGCC---------CuaCGCGCUGgCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 42208 0.67 0.541216
Target:  5'- -aCGGAAUGGGccGCG-GACauguacgcgCGCGCCg -3'
miRNA:   3'- ggGCUUUGCCCuaCGCgCUG---------GCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 43851 0.67 0.541216
Target:  5'- gCCCGGucGACGGG--GCGuCGGCCGgGaCUc -3'
miRNA:   3'- -GGGCU--UUGCCCuaCGC-GCUGGCgC-GG- -5'
26417 5' -58.1 NC_005345.2 + 40361 0.67 0.541216
Target:  5'- -gCGAGugGucaGGUGCGCGcACCGgGUCg -3'
miRNA:   3'- ggGCUUugCc--CUACGCGC-UGGCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 45755 0.67 0.541216
Target:  5'- gUCGAGG-GGGAUGcCGCGccggACCuCGCCg -3'
miRNA:   3'- gGGCUUUgCCCUAC-GCGC----UGGcGCGG- -5'
26417 5' -58.1 NC_005345.2 + 26802 0.67 0.541216
Target:  5'- gCCCGu-GCGGca---GCGACCcGCGCCc -3'
miRNA:   3'- -GGGCuuUGCCcuacgCGCUGG-CGCGG- -5'
26417 5' -58.1 NC_005345.2 + 15244 0.67 0.541216
Target:  5'- gCCCGu-ACGGaucagcUGCcCGGCCGCGCg -3'
miRNA:   3'- -GGGCuuUGCCcu----ACGcGCUGGCGCGg -5'
26417 5' -58.1 NC_005345.2 + 43932 0.67 0.541216
Target:  5'- cCCCGA--CGGcGuguaGCGCcgggccGGCCGUGCCg -3'
miRNA:   3'- -GGGCUuuGCC-Cua--CGCG------CUGGCGCGG- -5'
26417 5' -58.1 NC_005345.2 + 4233 0.67 0.541216
Target:  5'- --gGggGCGGGGUGCucaCGGCuCGgGCUg -3'
miRNA:   3'- gggCuuUGCCCUACGc--GCUG-GCgCGG- -5'
26417 5' -58.1 NC_005345.2 + 19008 0.67 0.541216
Target:  5'- aCCucGACGGGugGCGCG-CCGC-CCu -3'
miRNA:   3'- gGGcuUUGCCCuaCGCGCuGGCGcGG- -5'
26417 5' -58.1 NC_005345.2 + 35480 0.67 0.535001
Target:  5'- gCCCGAcggcgucgaGGGcgGCGCgcuGcucgucggcgcucacGCCGCGCCg -3'
miRNA:   3'- -GGGCUuug------CCCuaCGCG---C---------------UGGCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.