miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26419 5' -57.2 NC_005345.2 + 376 0.68 0.434405
Target:  5'- uGAGCCAcguGGCGaacacguGGCGA--AGGUCGUg -3'
miRNA:   3'- cCUCGGUu--CCGU-------CCGCUagUCCAGCA- -5'
26419 5' -57.2 NC_005345.2 + 2582 0.68 0.45489
Target:  5'- cGGGGCCGAGGCugacGGCGA--GGGa--- -3'
miRNA:   3'- -CCUCGGUUCCGu---CCGCUagUCCagca -5'
26419 5' -57.2 NC_005345.2 + 4345 0.71 0.313565
Target:  5'- cGAGCCGGGGUccugccucGGGCGggCGGGcCGc -3'
miRNA:   3'- cCUCGGUUCCG--------UCCGCuaGUCCaGCa -5'
26419 5' -57.2 NC_005345.2 + 5266 0.67 0.526627
Target:  5'- cGGGCggCAGGGCGGGCucgggGGUCGGGUa-- -3'
miRNA:   3'- cCUCG--GUUCCGUCCG-----CUAGUCCAgca -5'
26419 5' -57.2 NC_005345.2 + 5579 0.66 0.590163
Target:  5'- cGGGUCAGuuGGCgAGGCGGUCGGcgagcuuGUCGg -3'
miRNA:   3'- cCUCGGUU--CCG-UCCGCUAGUC-------CAGCa -5'
26419 5' -57.2 NC_005345.2 + 5753 0.7 0.345571
Target:  5'- -cAGCCGAGGacugcgccgAGGCGGUCcgcAGGUCGg -3'
miRNA:   3'- ccUCGGUUCCg--------UCCGCUAG---UCCAGCa -5'
26419 5' -57.2 NC_005345.2 + 6532 0.67 0.526627
Target:  5'- cGGGGCggggCGGGGCgGGGCGGUgGGGgaCGUg -3'
miRNA:   3'- -CCUCG----GUUCCG-UCCGCUAgUCCa-GCA- -5'
26419 5' -57.2 NC_005345.2 + 6822 0.68 0.435369
Target:  5'- cGGAcGCCAuGGCGGGCGGgaUCGacauGGUCc- -3'
miRNA:   3'- -CCU-CGGUuCCGUCCGCU--AGU----CCAGca -5'
26419 5' -57.2 NC_005345.2 + 7950 0.72 0.269855
Target:  5'- cGAGCCGgcGGGCGGG-GAUCccgucGGUCGUc -3'
miRNA:   3'- cCUCGGU--UCCGUCCgCUAGu----CCAGCA- -5'
26419 5' -57.2 NC_005345.2 + 9331 0.66 0.541507
Target:  5'- cGAuGCCGAGGguGGUcggcauguccacgguGAUCAGGggcagCGUc -3'
miRNA:   3'- cCU-CGGUUCCguCCG---------------CUAGUCCa----GCA- -5'
26419 5' -57.2 NC_005345.2 + 10051 0.67 0.505646
Target:  5'- --cGCCGAGGac-GCGAUCGGGuUCGa -3'
miRNA:   3'- ccuCGGUUCCgucCGCUAGUCC-AGCa -5'
26419 5' -57.2 NC_005345.2 + 14416 0.66 0.580351
Target:  5'- --cGCCGAcGCcugccGGGCGAUCgAGGUCGc -3'
miRNA:   3'- ccuCGGUUcCG-----UCCGCUAG-UCCAGCa -5'
26419 5' -57.2 NC_005345.2 + 14891 0.7 0.329281
Target:  5'- cGGGCCGAGGCggagcagcGGGCGAagCGGGcCGc -3'
miRNA:   3'- cCUCGGUUCCG--------UCCGCUa-GUCCaGCa -5'
26419 5' -57.2 NC_005345.2 + 15057 0.67 0.516094
Target:  5'- -cGGCCcGGcGCAGGaacuCGAUCAGGUCc- -3'
miRNA:   3'- ccUCGGuUC-CGUCC----GCUAGUCCAGca -5'
26419 5' -57.2 NC_005345.2 + 15183 0.71 0.298424
Target:  5'- cGGcGCCcgacuGGaauccGCGGGUGAUCAGGUCGa -3'
miRNA:   3'- -CCuCGGu----UC-----CGUCCGCUAGUCCAGCa -5'
26419 5' -57.2 NC_005345.2 + 17572 0.71 0.291068
Target:  5'- aGGGCCc-GGCAGaGCuGcAUCAGGUCGUg -3'
miRNA:   3'- cCUCGGuuCCGUC-CG-C-UAGUCCAGCA- -5'
26419 5' -57.2 NC_005345.2 + 18836 0.75 0.167825
Target:  5'- cGGGCCuggucaacGGGGCAGGCGAgCAGGUgCGg -3'
miRNA:   3'- cCUCGG--------UUCCGUCCGCUaGUCCA-GCa -5'
26419 5' -57.2 NC_005345.2 + 20151 0.71 0.289614
Target:  5'- gGGAGCCAccgcgcgAGGCGGaaGCGGUucaccugCAGGUCGc -3'
miRNA:   3'- -CCUCGGU-------UCCGUC--CGCUA-------GUCCAGCa -5'
26419 5' -57.2 NC_005345.2 + 20599 0.66 0.580351
Target:  5'- cGGGGCCGgcGGGCGcucgcaagucucGGCGA-CGGGgCGa -3'
miRNA:   3'- -CCUCGGU--UCCGU------------CCGCUaGUCCaGCa -5'
26419 5' -57.2 NC_005345.2 + 21756 0.68 0.47185
Target:  5'- aGGGCCccugugcugcucgcuGGCGGGCGAgccgGGGUCGg -3'
miRNA:   3'- cCUCGGuu-------------CCGUCCGCUag--UCCAGCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.