Results 1 - 20 of 40 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26419 | 5' | -57.2 | NC_005345.2 | + | 41234 | 1.08 | 0.000593 |
Target: 5'- gGGAGCCAAGGCAGGCGAUCAGGUCGUc -3' miRNA: 3'- -CCUCGGUUCCGUCCGCUAGUCCAGCA- -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 21756 | 0.68 | 0.47185 |
Target: 5'- aGGGCCccugugcugcucgcuGGCGGGCGAgccgGGGUCGg -3' miRNA: 3'- cCUCGGuu-------------CCGUCCGCUag--UCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 376 | 0.68 | 0.434405 |
Target: 5'- uGAGCCAcguGGCGaacacguGGCGA--AGGUCGUg -3' miRNA: 3'- cCUCGGUu--CCGU-------CCGCUagUCCAGCA- -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 22278 | 0.69 | 0.379854 |
Target: 5'- cGGAucGUCGAGGCggccgGGGCGAcgUGGGUCGa -3' miRNA: 3'- -CCU--CGGUUCCG-----UCCGCUa-GUCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 40342 | 0.7 | 0.337355 |
Target: 5'- --cGCCGuGGCGGGCGA-CGGGUaCGg -3' miRNA: 3'- ccuCGGUuCCGUCCGCUaGUCCA-GCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 23110 | 0.7 | 0.329281 |
Target: 5'- --cGCCGAGGCGagcgaggcGGCGAgUCGGGUCu- -3' miRNA: 3'- ccuCGGUUCCGU--------CCGCU-AGUCCAGca -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 20599 | 0.66 | 0.580351 |
Target: 5'- cGGGGCCGgcGGGCGcucgcaagucucGGCGA-CGGGgCGa -3' miRNA: 3'- -CCUCGGU--UCCGU------------CCGCUaGUCCaGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 10051 | 0.67 | 0.505646 |
Target: 5'- --cGCCGAGGac-GCGAUCGGGuUCGa -3' miRNA: 3'- ccuCGGUUCCgucCGCUAGUCC-AGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 37570 | 0.68 | 0.45489 |
Target: 5'- cGAGgCGGGcGCAGGCGGgcugCAGG-CGg -3' miRNA: 3'- cCUCgGUUC-CGUCCGCUa---GUCCaGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 40630 | 0.7 | 0.35393 |
Target: 5'- cGAGCCGcGGCAuGGCGAgcaAGGaCGUg -3' miRNA: 3'- cCUCGGUuCCGU-CCGCUag-UCCaGCA- -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 18836 | 0.75 | 0.167825 |
Target: 5'- cGGGCCuggucaacGGGGCAGGCGAgCAGGUgCGg -3' miRNA: 3'- cCUCGG--------UUCCGUCCGCUaGUCCA-GCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 15057 | 0.67 | 0.516094 |
Target: 5'- -cGGCCcGGcGCAGGaacuCGAUCAGGUCc- -3' miRNA: 3'- ccUCGGuUC-CGUCC----GCUAGUCCAGca -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 30371 | 0.72 | 0.256416 |
Target: 5'- cGGcAGCCcgcGGCGGGCG--CAGGUCGa -3' miRNA: 3'- -CC-UCGGuu-CCGUCCGCuaGUCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 6822 | 0.68 | 0.435369 |
Target: 5'- cGGAcGCCAuGGCGGGCGGgaUCGacauGGUCc- -3' miRNA: 3'- -CCU-CGGUuCCGUCCGCU--AGU----CCAGca -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 14416 | 0.66 | 0.580351 |
Target: 5'- --cGCCGAcGCcugccGGGCGAUCgAGGUCGc -3' miRNA: 3'- ccuCGGUUcCG-----UCCGCUAG-UCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 14891 | 0.7 | 0.329281 |
Target: 5'- cGGGCCGAGGCggagcagcGGGCGAagCGGGcCGc -3' miRNA: 3'- cCUCGGUUCCG--------UCCGCUa-GUCCaGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 33403 | 0.67 | 0.485032 |
Target: 5'- -cGGUCGAGGUcGGCG-UCGGGUaCGUa -3' miRNA: 3'- ccUCGGUUCCGuCCGCuAGUCCA-GCA- -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 5753 | 0.7 | 0.345571 |
Target: 5'- -cAGCCGAGGacugcgccgAGGCGGUCcgcAGGUCGg -3' miRNA: 3'- ccUCGGUUCCg--------UCCGCUAG---UCCAGCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 28679 | 0.69 | 0.397829 |
Target: 5'- cGGGGCCAcAGGCgAGGCGuuggcuacUCGGGcgCGg -3' miRNA: 3'- -CCUCGGU-UCCG-UCCGCu-------AGUCCa-GCa -5' |
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26419 | 5' | -57.2 | NC_005345.2 | + | 43594 | 0.69 | 0.407018 |
Target: 5'- cGGuGCCGAGGacguucguCAcGCuGAUCAGGUCGg -3' miRNA: 3'- -CCuCGGUUCC--------GUcCG-CUAGUCCAGCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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