miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 3' -53.5 NC_005345.2 + 35121 0.74 0.395546
Target:  5'- cCCGAucAUCcucgcuuucaagguGCUGGCGGCGaUCGGGgcaugGCUg -3'
miRNA:   3'- -GGCU--UAG--------------UGACCGCCGC-AGCCUa----UGG- -5'
26420 3' -53.5 NC_005345.2 + 7336 0.66 0.814528
Target:  5'- gCCGAGUCGCacGCGGUGUggcccgCGGuggcgcaGCCg -3'
miRNA:   3'- -GGCUUAGUGacCGCCGCA------GCCua-----UGG- -5'
26420 3' -53.5 NC_005345.2 + 35892 0.67 0.744863
Target:  5'- gCGGuUCGCcgacGGCGGCaucGUCGGGUGgCu -3'
miRNA:   3'- gGCUuAGUGa---CCGCCG---CAGCCUAUgG- -5'
26420 3' -53.5 NC_005345.2 + 14652 0.75 0.337564
Target:  5'- aCCGcGUCcucggcaccgGCcgGGCGGCGUCGccGAUGCCg -3'
miRNA:   3'- -GGCuUAG----------UGa-CCGCCGCAGC--CUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 27331 0.67 0.775635
Target:  5'- gUCGAuGUCGCgUGGCGGgG-CGcGGUACUu -3'
miRNA:   3'- -GGCU-UAGUG-ACCGCCgCaGC-CUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 629 0.66 0.82196
Target:  5'- gCGGAUCGCguccucggccuGCGGCGUgagCGGG-ACCg -3'
miRNA:   3'- gGCUUAGUGac---------CGCCGCA---GCCUaUGG- -5'
26420 3' -53.5 NC_005345.2 + 6943 0.66 0.814528
Target:  5'- cCCGGucGUCA-UGGUGGUGcCGGcgAUCg -3'
miRNA:   3'- -GGCU--UAGUgACCGCCGCaGCCuaUGG- -5'
26420 3' -53.5 NC_005345.2 + 33399 0.75 0.337564
Target:  5'- gCCGcGGUCGa-GGuCGGCGUCGGGUACg -3'
miRNA:   3'- -GGC-UUAGUgaCC-GCCGCAGCCUAUGg -5'
26420 3' -53.5 NC_005345.2 + 38053 0.75 0.321498
Target:  5'- aUCGGAUCGC-GGUGGCGg-GGAUugCg -3'
miRNA:   3'- -GGCUUAGUGaCCGCCGCagCCUAugG- -5'
26420 3' -53.5 NC_005345.2 + 26224 0.73 0.426372
Target:  5'- cCUGAAcCGCaUGGCGGCGUCucgguucaguGGAUuccGCCa -3'
miRNA:   3'- -GGCUUaGUG-ACCGCCGCAG----------CCUA---UGG- -5'
26420 3' -53.5 NC_005345.2 + 10133 0.7 0.581593
Target:  5'- cCCGAggUACaGGCGGCGgccgcucugCGGAgcgcccGCCg -3'
miRNA:   3'- -GGCUuaGUGaCCGCCGCa--------GCCUa-----UGG- -5'
26420 3' -53.5 NC_005345.2 + 18232 0.66 0.814528
Target:  5'- gCGGGcCGCcGGCGGuCGUCaccGGGUugCa -3'
miRNA:   3'- gGCUUaGUGaCCGCC-GCAG---CCUAugG- -5'
26420 3' -53.5 NC_005345.2 + 25629 0.71 0.559833
Target:  5'- gUGAAUCAg-GGCGGUGUCgagcaGGAacUGCCa -3'
miRNA:   3'- gGCUUAGUgaCCGCCGCAG-----CCU--AUGG- -5'
26420 3' -53.5 NC_005345.2 + 27844 0.7 0.603521
Target:  5'- gCCGc-UCACgGGCGGCGUCGcucgucGUACUc -3'
miRNA:   3'- -GGCuuAGUGaCCGCCGCAGCc-----UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 41575 0.7 0.614526
Target:  5'- gCCGugcUCGCgGGCGuGCucgGUCGuGAUGCCg -3'
miRNA:   3'- -GGCuu-AGUGaCCGC-CG---CAGC-CUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 34733 0.69 0.625547
Target:  5'- cUCG-AUCGCccGGCaGGCGUCGGcgACg -3'
miRNA:   3'- -GGCuUAGUGa-CCG-CCGCAGCCuaUGg -5'
26420 3' -53.5 NC_005345.2 + 4374 0.69 0.636574
Target:  5'- gCCGc-UCGgUGGgGGUGUCGGucACCg -3'
miRNA:   3'- -GGCuuAGUgACCgCCGCAGCCuaUGG- -5'
26420 3' -53.5 NC_005345.2 + 16061 0.67 0.775635
Target:  5'- uCCGggUC-CgGGCGGUGcgUGGcagcUGCCg -3'
miRNA:   3'- -GGCuuAGuGaCCGCCGCa-GCCu---AUGG- -5'
26420 3' -53.5 NC_005345.2 + 35005 0.67 0.765511
Target:  5'- gCCGGggCGCUgcGGCGGCcacGUgGGGgcgggACCg -3'
miRNA:   3'- -GGCUuaGUGA--CCGCCG---CAgCCUa----UGG- -5'
26420 3' -53.5 NC_005345.2 + 3233 0.67 0.765511
Target:  5'- uUCGGGcagcgCACUGugcacGCGGCGcUCGG-UGCCg -3'
miRNA:   3'- -GGCUUa----GUGAC-----CGCCGC-AGCCuAUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.