Results 1 - 20 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
26420 | 3' | -53.5 | NC_005345.2 | + | 41587 | 1.14 | 0.000783 |
Target: 5'- gCCGAAUCACUGGCGGCGUCGGAUACCu -3' miRNA: 3'- -GGCUUAGUGACCGCCGCAGCCUAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 8719 | 0.68 | 0.693613 |
Target: 5'- gCCGAcucguccGUCGCcGGCGGCGauccguacggacgcgUCGGcgguguggcuggcGUGCCa -3' miRNA: 3'- -GGCU-------UAGUGaCCGCCGC---------------AGCC-------------UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 35892 | 0.67 | 0.744863 |
Target: 5'- gCGGuUCGCcgacGGCGGCaucGUCGGGUGgCu -3' miRNA: 3'- gGCUuAGUGa---CCGCCG---CAGCCUAUgG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 37157 | 0.66 | 0.832864 |
Target: 5'- gCGAagaugAUCACggaagGGuCGGgGUCGGAcauCCg -3' miRNA: 3'- gGCU-----UAGUGa----CC-GCCgCAGCCUau-GG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 14652 | 0.75 | 0.337564 |
Target: 5'- aCCGcGUCcucggcaccgGCcgGGCGGCGUCGccGAUGCCg -3' miRNA: 3'- -GGCuUAG----------UGa-CCGCCGCAGC--CUAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 35121 | 0.74 | 0.395546 |
Target: 5'- cCCGAucAUCcucgcuuucaagguGCUGGCGGCGaUCGGGgcaugGCUg -3' miRNA: 3'- -GGCU--UAG--------------UGACCGCCGC-AGCCUa----UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 30499 | 0.72 | 0.475671 |
Target: 5'- gCCGggUCA-UGGCGaaccCGggCGGGUACCg -3' miRNA: 3'- -GGCuuAGUgACCGCc---GCa-GCCUAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 5430 | 0.72 | 0.496175 |
Target: 5'- gCCGAGUUcUUcGGCGGCGccCGGGUcgGCCg -3' miRNA: 3'- -GGCUUAGuGA-CCGCCGCa-GCCUA--UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 18314 | 0.71 | 0.538305 |
Target: 5'- gCCGucgCACUGGuCGGCGUCaccGGcGCCg -3' miRNA: 3'- -GGCuuaGUGACC-GCCGCAGc--CUaUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 13043 | 0.68 | 0.691439 |
Target: 5'- aCCGGAUCACcGGCaGCGgcaucgugUGGAccggACCc -3' miRNA: 3'- -GGCUUAGUGaCCGcCGCa-------GCCUa---UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 41875 | 0.7 | 0.591443 |
Target: 5'- cUCGGcgAUCGCgcgGGCGGCGacgcuugUCGGuucgGCCg -3' miRNA: 3'- -GGCU--UAGUGa--CCGCCGC-------AGCCua--UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 29047 | 0.71 | 0.527647 |
Target: 5'- uUCGAGUUucuGCgUGGCGGCGgCGGGcucGCCg -3' miRNA: 3'- -GGCUUAG---UG-ACCGCCGCaGCCUa--UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 27155 | 0.77 | 0.249797 |
Target: 5'- cCCGAggCGCUGcGCGGCGUCccgccggaGGAggucUACCg -3' miRNA: 3'- -GGCUuaGUGAC-CGCCGCAG--------CCU----AUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 22417 | 0.69 | 0.647596 |
Target: 5'- gCCGGuucaucgcuGUCACggGGCGGaCGuUCGGcgacAUGCCa -3' miRNA: 3'- -GGCU---------UAGUGa-CCGCC-GC-AGCC----UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 38053 | 0.75 | 0.321498 |
Target: 5'- aUCGGAUCGC-GGUGGCGg-GGAUugCg -3' miRNA: 3'- -GGCUUAGUGaCCGCCGCagCCUAugG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 14735 | 0.72 | 0.496175 |
Target: 5'- aCCGAGgccggCAC-GGUGGUGUCGGugacGUGCUc -3' miRNA: 3'- -GGCUUa----GUGaCCGCCGCAGCC----UAUGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 11587 | 0.69 | 0.647596 |
Target: 5'- aCGGGcgccUCGC-GGUGGCGUgGGGcgGCCg -3' miRNA: 3'- gGCUU----AGUGaCCGCCGCAgCCUa-UGG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 23111 | 0.67 | 0.744863 |
Target: 5'- gCCGAGgcgaGCgaGGCGGCGagUCGGGUcuguCCc -3' miRNA: 3'- -GGCUUag--UGa-CCGCCGC--AGCCUAu---GG- -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 33399 | 0.75 | 0.337564 |
Target: 5'- gCCGcGGUCGa-GGuCGGCGUCGGGUACg -3' miRNA: 3'- -GGC-UUAGUgaCC-GCCGCAGCCUAUGg -5' |
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26420 | 3' | -53.5 | NC_005345.2 | + | 26224 | 0.73 | 0.426372 |
Target: 5'- cCUGAAcCGCaUGGCGGCGUCucgguucaguGGAUuccGCCa -3' miRNA: 3'- -GGCUUaGUG-ACCGCCGCAG----------CCUA---UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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