miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 3' -53.5 NC_005345.2 + 41587 1.14 0.000783
Target:  5'- gCCGAAUCACUGGCGGCGUCGGAUACCu -3'
miRNA:   3'- -GGCUUAGUGACCGCCGCAGCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 27155 0.77 0.249797
Target:  5'- cCCGAggCGCUGcGCGGCGUCccgccggaGGAggucUACCg -3'
miRNA:   3'- -GGCUuaGUGAC-CGCCGCAG--------CCU----AUGG- -5'
26420 3' -53.5 NC_005345.2 + 48938 0.76 0.298483
Target:  5'- uUCGAA-CGCUgcgGGCGGUGUgacgcCGGAUGCCa -3'
miRNA:   3'- -GGCUUaGUGA---CCGCCGCA-----GCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 46605 0.76 0.298483
Target:  5'- gCUGGAUCGg-GGcCGGCGcCGGGUGCCc -3'
miRNA:   3'- -GGCUUAGUgaCC-GCCGCaGCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 38053 0.75 0.321498
Target:  5'- aUCGGAUCGC-GGUGGCGg-GGAUugCg -3'
miRNA:   3'- -GGCUUAGUGaCCGCCGCagCCUAugG- -5'
26420 3' -53.5 NC_005345.2 + 20286 0.75 0.337564
Target:  5'- aCCGGAUCguGCcGGCGaCGUCGGucuUACCg -3'
miRNA:   3'- -GGCUUAG--UGaCCGCcGCAGCCu--AUGG- -5'
26420 3' -53.5 NC_005345.2 + 33399 0.75 0.337564
Target:  5'- gCCGcGGUCGa-GGuCGGCGUCGGGUACg -3'
miRNA:   3'- -GGC-UUAGUgaCC-GCCGCAGCCUAUGg -5'
26420 3' -53.5 NC_005345.2 + 14652 0.75 0.337564
Target:  5'- aCCGcGUCcucggcaccgGCcgGGCGGCGUCGccGAUGCCg -3'
miRNA:   3'- -GGCuUAG----------UGa-CCGCCGCAGC--CUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 2586 0.74 0.354206
Target:  5'- gCCGAG--GCUGaCGGCGagGGAUACCu -3'
miRNA:   3'- -GGCUUagUGACcGCCGCagCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 35121 0.74 0.395546
Target:  5'- cCCGAucAUCcucgcuuucaagguGCUGGCGGCGaUCGGGgcaugGCUg -3'
miRNA:   3'- -GGCU--UAG--------------UGACCGCCGC-AGCCUa----UGG- -5'
26420 3' -53.5 NC_005345.2 + 26224 0.73 0.426372
Target:  5'- cCUGAAcCGCaUGGCGGCGUCucgguucaguGGAUuccGCCa -3'
miRNA:   3'- -GGCUUaGUG-ACCGCCGCAG----------CCUA---UGG- -5'
26420 3' -53.5 NC_005345.2 + 42910 0.73 0.435991
Target:  5'- gCCGGuaGUCGCUcGG-GGCGUCGuGGUGCa -3'
miRNA:   3'- -GGCU--UAGUGA-CCgCCGCAGC-CUAUGg -5'
26420 3' -53.5 NC_005345.2 + 35184 0.72 0.475671
Target:  5'- cCCGggUUGCUGGCaGGCaGagGGGcGCCc -3'
miRNA:   3'- -GGCuuAGUGACCG-CCG-CagCCUaUGG- -5'
26420 3' -53.5 NC_005345.2 + 30499 0.72 0.475671
Target:  5'- gCCGggUCA-UGGCGaaccCGggCGGGUACCg -3'
miRNA:   3'- -GGCuuAGUgACCGCc---GCa-GCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 14735 0.72 0.496175
Target:  5'- aCCGAGgccggCAC-GGUGGUGUCGGugacGUGCUc -3'
miRNA:   3'- -GGCUUa----GUGaCCGCCGCAGCC----UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 5430 0.72 0.496175
Target:  5'- gCCGAGUUcUUcGGCGGCGccCGGGUcgGCCg -3'
miRNA:   3'- -GGCUUAGuGA-CCGCCGCa-GCCUA--UGG- -5'
26420 3' -53.5 NC_005345.2 + 43999 0.71 0.506576
Target:  5'- aCGAGUCGCUcGuGCacGGUGUCGGcgcucAUGCCg -3'
miRNA:   3'- gGCUUAGUGA-C-CG--CCGCAGCC-----UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 34112 0.71 0.517068
Target:  5'- gCCGGAUgGCUGGaaGaGUCGGGgugGCCa -3'
miRNA:   3'- -GGCUUAgUGACCgcCgCAGCCUa--UGG- -5'
26420 3' -53.5 NC_005345.2 + 774 0.71 0.527647
Target:  5'- cCCG----GCcGGCGGCGggGGAUGCCg -3'
miRNA:   3'- -GGCuuagUGaCCGCCGCagCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 29047 0.71 0.527647
Target:  5'- uUCGAGUUucuGCgUGGCGGCGgCGGGcucGCCg -3'
miRNA:   3'- -GGCUUAG---UG-ACCGCCGCaGCCUa--UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.