miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 3' -53.5 NC_005345.2 + 629 0.66 0.82196
Target:  5'- gCGGAUCGCguccucggccuGCGGCGUgagCGGG-ACCg -3'
miRNA:   3'- gGCUUAGUGac---------CGCCGCA---GCCUaUGG- -5'
26420 3' -53.5 NC_005345.2 + 774 0.71 0.527647
Target:  5'- cCCG----GCcGGCGGCGggGGAUGCCg -3'
miRNA:   3'- -GGCuuagUGaCCGCCGCagCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 2586 0.74 0.354206
Target:  5'- gCCGAG--GCUGaCGGCGagGGAUACCu -3'
miRNA:   3'- -GGCUUagUGACcGCCGCagCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 2719 0.66 0.79445
Target:  5'- uUCGAagAUCACUGgacGCGGCGagacggCGGucgacaaGUGCCg -3'
miRNA:   3'- -GGCU--UAGUGAC---CGCCGCa-----GCC-------UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 3128 0.67 0.764491
Target:  5'- gCCGAGgcgcCACUGcacagccgugccGaCGGCGUCGGcgagcucgucgggGUGCCg -3'
miRNA:   3'- -GGCUUa---GUGAC------------C-GCCGCAGCC-------------UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 3233 0.67 0.765511
Target:  5'- uUCGGGcagcgCACUGugcacGCGGCGcUCGG-UGCCg -3'
miRNA:   3'- -GGCUUa----GUGAC-----CGCCGC-AGCCuAUGG- -5'
26420 3' -53.5 NC_005345.2 + 3455 0.67 0.775635
Target:  5'- cCCGAGcUCGCgcgGGC--UGUCGGAcaUGCCu -3'
miRNA:   3'- -GGCUU-AGUGa--CCGccGCAGCCU--AUGG- -5'
26420 3' -53.5 NC_005345.2 + 4374 0.69 0.636574
Target:  5'- gCCGc-UCGgUGGgGGUGUCGGucACCg -3'
miRNA:   3'- -GGCuuAGUgACCgCCGCAGCCuaUGG- -5'
26420 3' -53.5 NC_005345.2 + 5253 0.66 0.799302
Target:  5'- aCGGugggcGUgACgGGCGGCagggcgggcucggggGUCGGGUACUg -3'
miRNA:   3'- gGCU-----UAgUGaCCGCCG---------------CAGCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 5430 0.72 0.496175
Target:  5'- gCCGAGUUcUUcGGCGGCGccCGGGUcgGCCg -3'
miRNA:   3'- -GGCUUAGuGA-CCGCCGCa-GCCUA--UGG- -5'
26420 3' -53.5 NC_005345.2 + 5644 0.69 0.636574
Target:  5'- gCCGggUuCGCcgcgaccuUGGCGGCGaUCGaGGUcACCu -3'
miRNA:   3'- -GGCuuA-GUG--------ACCGCCGC-AGC-CUA-UGG- -5'
26420 3' -53.5 NC_005345.2 + 6363 0.66 0.795424
Target:  5'- gCCGggUuggcCGC-GGUGGCGUUGcGGUcCCa -3'
miRNA:   3'- -GGCuuA----GUGaCCGCCGCAGC-CUAuGG- -5'
26420 3' -53.5 NC_005345.2 + 6943 0.66 0.814528
Target:  5'- cCCGGucGUCA-UGGUGGUGcCGGcgAUCg -3'
miRNA:   3'- -GGCU--UAGUgACCGCCGCaGCCuaUGG- -5'
26420 3' -53.5 NC_005345.2 + 7336 0.66 0.814528
Target:  5'- gCCGAGUCGCacGCGGUGUggcccgCGGuggcgcaGCCg -3'
miRNA:   3'- -GGCUUAGUGacCGCCGCA------GCCua-----UGG- -5'
26420 3' -53.5 NC_005345.2 + 8614 0.66 0.823797
Target:  5'- cUCGGcgAUCACgaacguuccGGCGGCGUCGcaGUACa -3'
miRNA:   3'- -GGCU--UAGUGa--------CCGCCGCAGCc-UAUGg -5'
26420 3' -53.5 NC_005345.2 + 8719 0.68 0.693613
Target:  5'- gCCGAcucguccGUCGCcGGCGGCGauccguacggacgcgUCGGcgguguggcuggcGUGCCa -3'
miRNA:   3'- -GGCU-------UAGUGaCCGCCGC---------------AGCC-------------UAUGG- -5'
26420 3' -53.5 NC_005345.2 + 8920 0.66 0.805067
Target:  5'- gCCaGGAUCACggcGGCcgcccccgugGGCGggcugCGGGUGCUc -3'
miRNA:   3'- -GG-CUUAGUGa--CCG----------CCGCa----GCCUAUGG- -5'
26420 3' -53.5 NC_005345.2 + 10067 0.66 0.832864
Target:  5'- gCCGAcGUCGC-GGCGaGCGUCcacucGAUcGCCg -3'
miRNA:   3'- -GGCU-UAGUGaCCGC-CGCAGc----CUA-UGG- -5'
26420 3' -53.5 NC_005345.2 + 10133 0.7 0.581593
Target:  5'- cCCGAggUACaGGCGGCGgccgcucugCGGAgcgcccGCCg -3'
miRNA:   3'- -GGCUuaGUGaCCGCCGCa--------GCCUa-----UGG- -5'
26420 3' -53.5 NC_005345.2 + 11587 0.69 0.647596
Target:  5'- aCGGGcgccUCGC-GGUGGCGUgGGGcgGCCg -3'
miRNA:   3'- gGCUU----AGUGaCCGCCGCAgCCUa-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.