miRNA display CGI


Results 41 - 60 of 362 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
26420 5' -61.6 NC_005345.2 + 31093 0.66 0.362932
Target:  5'- cCAGCuguCCACcacCCGCCGCaacguGGCcGCg -3'
miRNA:   3'- aGUCGu--GGUGcu-GGCGGCGg----CCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 32799 0.66 0.362932
Target:  5'- gCGGCgccgGCCGCGA-UGCCGCCGaCgAGCu -3'
miRNA:   3'- aGUCG----UGGUGCUgGCGGCGGCcG-UCG- -5'
26420 5' -61.6 NC_005345.2 + 18969 0.66 0.362932
Target:  5'- -aAGCgcucGCCGCaugGGUCGCCGCUGGcCGGCg -3'
miRNA:   3'- agUCG----UGGUG---CUGGCGGCGGCC-GUCG- -5'
26420 5' -61.6 NC_005345.2 + 21273 0.66 0.362932
Target:  5'- gUCGuCGCCGuCGuccCCGUCGUCGGgGGCg -3'
miRNA:   3'- -AGUcGUGGU-GCu--GGCGGCGGCCgUCG- -5'
26420 5' -61.6 NC_005345.2 + 44258 0.66 0.362932
Target:  5'- cUCGGCGagCAuCGACuCGCagcggCGCCGGUAGUc -3'
miRNA:   3'- -AGUCGUg-GU-GCUG-GCG-----GCGGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5054 0.66 0.362932
Target:  5'- -aGGCugCA-GACCGCUGUgaGCAGCu -3'
miRNA:   3'- agUCGugGUgCUGGCGGCGgcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 44571 0.66 0.362932
Target:  5'- --cGCAcuCCACGACCGgaCuCgGGCAGCa -3'
miRNA:   3'- aguCGU--GGUGCUGGCg-GcGgCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 39344 0.66 0.357972
Target:  5'- gCGGCACCggccgcgacacagcgGCGAacaCGCUGUC-GCAGCu -3'
miRNA:   3'- aGUCGUGG---------------UGCUg--GCGGCGGcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 35404 0.66 0.354693
Target:  5'- aUCAGUGCCuCGAugucgUCGUCGuCCGGUucGGCg -3'
miRNA:   3'- -AGUCGUGGuGCU-----GGCGGC-GGCCG--UCG- -5'
26420 5' -61.6 NC_005345.2 + 30384 0.66 0.354693
Target:  5'- --uGCuCCGCaGuACaCGCCGCCGGCcauGCg -3'
miRNA:   3'- aguCGuGGUG-C-UG-GCGGCGGCCGu--CG- -5'
26420 5' -61.6 NC_005345.2 + 21008 0.66 0.354693
Target:  5'- -gGGCGaCGCGuuCGCCGgcCCGGguGCg -3'
miRNA:   3'- agUCGUgGUGCugGCGGC--GGCCguCG- -5'
26420 5' -61.6 NC_005345.2 + 41780 0.66 0.354693
Target:  5'- aUCAGCgGCCAC--CC-CCGCCcGGCuGCg -3'
miRNA:   3'- -AGUCG-UGGUGcuGGcGGCGG-CCGuCG- -5'
26420 5' -61.6 NC_005345.2 + 32574 0.66 0.354693
Target:  5'- gCAGCGuugaaCGCGAUCGUCGCgaCGGUgAGCa -3'
miRNA:   3'- aGUCGUg----GUGCUGGCGGCG--GCCG-UCG- -5'
26420 5' -61.6 NC_005345.2 + 19902 0.66 0.354693
Target:  5'- cCAGCAUCAUGGCauucgGCCGaCGcaagaGCAGCg -3'
miRNA:   3'- aGUCGUGGUGCUGg----CGGCgGC-----CGUCG- -5'
26420 5' -61.6 NC_005345.2 + 9710 0.66 0.354693
Target:  5'- cCAGCACaucaGuCCGUCGCCGGggucgAGCg -3'
miRNA:   3'- aGUCGUGgug-CuGGCGGCGGCCg----UCG- -5'
26420 5' -61.6 NC_005345.2 + 13169 0.66 0.354693
Target:  5'- cUCGGCggaaggacaACCgAUGACCGgcCCGagCGGCAGCc -3'
miRNA:   3'- -AGUCG---------UGG-UGCUGGC--GGCg-GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 27617 0.66 0.353876
Target:  5'- -gAGCACgGCGAgaucgguCCGCUGCUcGCGGUc -3'
miRNA:   3'- agUCGUGgUGCU-------GGCGGCGGcCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 5460 0.66 0.349813
Target:  5'- cCGGC-CCACGcggcgaggcugaucaGCCacCCGgCGGCGGCa -3'
miRNA:   3'- aGUCGuGGUGC---------------UGGc-GGCgGCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 36722 0.66 0.346587
Target:  5'- gCAGCuGCCGaaGCCGuCCGCgagcgaucUGGCGGCg -3'
miRNA:   3'- aGUCG-UGGUgcUGGC-GGCG--------GCCGUCG- -5'
26420 5' -61.6 NC_005345.2 + 4178 0.66 0.346587
Target:  5'- -aGGCGCUcacgggGCGGCagGCCGUgcaGGCGGCg -3'
miRNA:   3'- agUCGUGG------UGCUGg-CGGCGg--CCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.